Literature DB >> 31008377

Point mutation detection by economic HRM protocol primer design.

Dhafer A F Al-Koofee1, Jawad Mohammed Ismael2, Shaden M H Mubarak1.   

Abstract

Globally more than 100 million SNPs in populations. These variations approximately 4-5 million SNPs in a people genome, occur almost every 1000 nucleotides on average and present either unique or in many in individuals. They can act as genetic signs, associated with illness and respond to chemicals and drugs. SNPs occurrence within or near a gene play important role in disease throughout affecting gene task. Frequently many protocols have been used to study single nucleotide polymorphism (SNP) among human variants genome. Restriction fragment length polymorphism (RFLP), Amplification refractory mutation system PCR(ARMS-PCR), sequencing and SNaPshot assays considered familial methods. The potential risk of contamination after PCR is common due to further other steps. In this direction, a high resolution melting (HRM) real-time PCR method is an alternative, reducing the post-PCR transferring steps. uVariants is clarified as appropriate website for designing primers used for SNP recognition by easy and inexpensive protocol called HRM. The researchers can focus on the interest of reference SNP ID number, or "rs" ID to avoid loss time. In this article description how to uses uVariants website for primer design used in HRM technique. AIMS: To describe uVariants and uDesign software, application and usefulness of HRM technique primer design in the genotyping SNPs among people and public health. ACCESSIBILITY AND REQUIREMENTS: uVariants and uDesign are freely accessible at: https://www.dna.utah.edu/variants/;https://www.dna.utah.edu/udesign/app.php respectively.The network server supports the browsers: Chrome, Firefox, Torch, CoolNovo, 360 Browser, Internet Explorer, Opera, and Safari.

Entities:  

Keywords:  HRM; PCR; Point mutation; Primer design; Real-time PCR; SNP; Web service

Year:  2019        PMID: 31008377     DOI: 10.1016/j.bbrep.2019.100628

Source DB:  PubMed          Journal:  Biochem Biophys Rep        ISSN: 2405-5808


  15 in total

Review 1.  High-resolution DNA melting analysis for simple and efficient molecular diagnostics.

Authors:  Gudrun H Reed; Jana O Kent; Carl T Wittwer
Journal:  Pharmacogenomics       Date:  2007-06       Impact factor: 2.533

2.  Detection of alpha-thalassemia-1 Southeast Asian type using real-time gap-PCR with SYBR Green1 and high resolution melting analysis.

Authors:  Sakorn Pornprasert; Arunee Phusua; Sudjai Suanta; Rattika Saetung; Torpong Sanguansermsri
Journal:  Eur J Haematol       Date:  2008-02-12       Impact factor: 2.997

Review 3.  High-resolution melting analysis (HRMA): more than just sequence variant screening.

Authors:  Rolf H A M Vossen; Emmelien Aten; Anja Roos; Johan T den Dunnen
Journal:  Hum Mutat       Date:  2009-06       Impact factor: 4.878

Review 4.  High-resolution DNA melting analysis in clinical research and diagnostics.

Authors:  Jesse L Montgomery; Lindsay N Sanford; Carl T Wittwer
Journal:  Expert Rev Mol Diagn       Date:  2010-03       Impact factor: 5.225

5.  Abundant raw material for cis-regulatory evolution in humans.

Authors:  Matthew V Rockman; Gregory A Wray
Journal:  Mol Biol Evol       Date:  2002-11       Impact factor: 16.240

6.  An efficient procedure for genotyping single nucleotide polymorphisms.

Authors:  S Ye; S Dhillon; X Ke; A R Collins; I N Day
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

Review 7.  Pharmacogenomics: the genetics of variable drug responses.

Authors:  Dan M Roden; Russell A Wilke; Heyo K Kroemer; C Michael Stein
Journal:  Circulation       Date:  2011-04-19       Impact factor: 29.690

8.  Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants.

Authors:  Xiaohan Yang; Brian E Scheffler; Leslie A Weston
Journal:  Plant Methods       Date:  2006-03-01       Impact factor: 4.993

9.  Characterization of EvaGreen and the implication of its physicochemical properties for qPCR applications.

Authors:  Fei Mao; Wai-Yee Leung; Xing Xin
Journal:  BMC Biotechnol       Date:  2007-11-09       Impact factor: 2.563

10.  BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

Authors:  Frank M You; Naxin Huo; Yong Qiang Gu; Ming-Cheng Luo; Yaqin Ma; Dave Hane; Gerard R Lazo; Jan Dvorak; Olin D Anderson
Journal:  BMC Bioinformatics       Date:  2008-05-29       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.