Literature DB >> 31003826

Function and Evolution of Upstream ORFs in Eukaryotes.

Hong Zhang1, Yirong Wang1, Jian Lu2.   

Abstract

There is growing interest in the role of translational regulation in cellular homeostasis during organismal development. Translation initiation is the rate-limiting step in mRNA translation and is central to translational regulation. Upstream open reading frames (uORFs) are regulatory elements that are prevalent in eukaryotic mRNAs. uORFs modulate the translation initiation rate of downstream coding sequences (CDSs) by sequestering ribosomes. Over the past several years, genome-wide studies have revealed the widespread regulatory functions of uORFs in different species in different biological contexts. Here, we review the current understanding of uORF-mediated translational regulation from the perspective of functional and evolutionary genomics and address remaining gaps that deserve further study.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Keywords:  RNA-sequencing; coding sequences; evolution; ribosome profiling; stress response; translational regulation

Year:  2019        PMID: 31003826     DOI: 10.1016/j.tibs.2019.03.002

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  29 in total

1.  Metabolite Control of Translation by Conserved Peptide uORFs: The Ribosome as a Metabolite Multisensor.

Authors:  Sjors van der Horst; Teodora Filipovska; Johannes Hanson; Sjef Smeekens
Journal:  Plant Physiol       Date:  2019-08-26       Impact factor: 8.340

2.  Unique and contrasting effects of light and temperature cues on plant transcriptional programs.

Authors:  Mai Jarad; Rea Antoniou-Kourounioti; Jo Hepworth; Julia I Qüesta
Journal:  Transcription       Date:  2020-10-04

3.  Examining Myc-Dependent Translation Changes in Cellular Homeostasis and Cancer.

Authors:  Joanna R Kovalski; Yichen Xu; Davide Ruggero
Journal:  Methods Mol Biol       Date:  2021

Review 4.  Rules are made to be broken: a "simple" model organism reveals the complexity of gene regulation.

Authors:  Andrea L Higdon; Gloria A Brar
Journal:  Curr Genet       Date:  2020-11-01       Impact factor: 3.886

5.  Tissue- and stage-specific landscape of the mouse translatome.

Authors:  Hongwei Wang; Yan Wang; Jiaqi Yang; Qian Zhao; Nan Tang; Congying Chen; Huihui Li; Chichi Cheng; Mingzhe Xie; Yang Yang; Zhi Xie
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

6.  Multiplexed Analysis of Human uORF Regulatory Functions During the ISR Using PoLib-Seq.

Authors:  Gemma E May; C Joel McManus
Journal:  Methods Mol Biol       Date:  2022

7.  Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels.

Authors:  Yuta Hiragori; Hiro Takahashi; Taihei Karino; Atsushi Kaido; Noriya Hayashi; Shun Sasaki; Kodai Nakao; Taichiro Motomura; Yui Yamashita; Satoshi Naito; Hitoshi Onouchi
Journal:  Plant Mol Biol       Date:  2022-08-31       Impact factor: 4.335

Review 8.  Folding the Mitochondrial UPR into the Integrated Stress Response.

Authors:  Nadine S Anderson; Cole M Haynes
Journal:  Trends Cell Biol       Date:  2020-04-02       Impact factor: 20.808

9.  Manipulating gene translation in plants by CRISPR-Cas9-mediated genome editing of upstream open reading frames.

Authors:  Xiaomin Si; Huawei Zhang; Yanpeng Wang; Kunling Chen; Caixia Gao
Journal:  Nat Protoc       Date:  2020-01-08       Impact factor: 13.491

10.  FKBP39 controls nutrient dependent Nprl3 expression and TORC1 activity in Drosophila.

Authors:  Ying Zhou; Jian Guo; Xinyu Wang; Yang Cheng; Jianwen Guan; Priyam Barman; Ming-An Sun; Yuanyuan Fu; Wanhong Wei; Congjing Feng; Mary A Lilly; Youheng Wei
Journal:  Cell Death Dis       Date:  2021-06-02       Impact factor: 8.469

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