Literature DB >> 30999440

Active dynamics and spatially coherent motion in chromosomes subject to enzymatic force dipoles.

Stefanie Put1, Takahiro Sakaue2,3, Carlo Vanderzande1,4.   

Abstract

Inspired by recent experiments on chromosomal dynamics, we introduce an exactly solvable model for the interaction between a flexible polymer and a set of motorlike enzymes. The enzymes can bind and unbind to specific sites of the polymer and produce a dipolar force on two neighboring monomers when bound. We study the resulting nonequilibrium dynamics of the polymer and find that the motion of the monomers has several properties that were observed experimentally for chromosomal loci: a subdiffusive mean-square displacement and the appearance of regions of correlated motion. We also determine the velocity autocorrelation of the monomers and find that the underlying stochastic process is not fractional Brownian motion. Finally, we show that the active forces swell the polymer by an amount that becomes constant for large polymers.

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Year:  2019        PMID: 30999440     DOI: 10.1103/PhysRevE.99.032421

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  4 in total

1.  Session 1SEA-physics of chromatin dynamics at the 57th Biophysical Society of Japan meeting.

Authors:  Yuma Ito; Akatsuki Kimura
Journal:  Biophys Rev       Date:  2020-02-13

2.  Active Topological Glass Confined within a Spherical Cavity.

Authors:  Iurii Chubak; Stanard Mebwe Pachong; Kurt Kremer; Christos N Likos; Jan Smrek
Journal:  Macromolecules       Date:  2022-01-25       Impact factor: 5.985

3.  Multiscale modeling of genome organization with maximum entropy optimization.

Authors:  Xingcheng Lin; Yifeng Qi; Andrew P Latham; Bin Zhang
Journal:  J Chem Phys       Date:  2021-07-07       Impact factor: 3.488

Review 4.  Navigating the crowd: visualizing coordination between genome dynamics, structure, and transcription.

Authors:  Haitham A Shaban; Roman Barth; Kerstin Bystricky
Journal:  Genome Biol       Date:  2020-11-17       Impact factor: 13.583

  4 in total

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