Literature DB >> 30996780

Synthesis and Evaluation of Bifunctional Aminothiazoles as Antiretrovirals Targeting the HIV-1 Nucleocapsid Protein.

Mattia Mori1, Maria Chiara Dasso Lang1, Francesco Saladini2, Nastasja Palombi1, Lesia Kovalenko3, Davide De Forni4, Barbara Poddesu4, Laura Friggeri1, Alessia Giannini2, Savina Malancona5, Vincenzo Summa5, Maurizio Zazzi2, Yves Mely3, Maurizio Botta1,6,7.   

Abstract

Small molecule inhibitors of the HIV-1 nucleocapsid protein (NC) are considered as promising agents in the treatment of HIV/AIDS. In an effort to exploit the privileged 2-amino-4-phenylthiazole moiety in NC inhibition, here we conceived, synthesized, and tested in vitro 18 NC inhibitors (NCIs) bearing a double functionalization. In these NCIs, one part of the molecule is deputed to interact noncovalently with the NC hydrophobic pocket, while the second portion is designed to interact with the N-terminal domain of NC. This binding hypothesis was verified by molecular dynamics simulations, while the linkage between these two pharmacophores was found to enhance antiretroviral activity both on the wild-type virus and on HIV-1 strains with resistance to currently licensed drugs. The two most interesting compounds 6 and 13 showed no cytotoxicity, thus becoming valuable leads for further investigations.

Entities:  

Year:  2018        PMID: 30996780      PMCID: PMC6466545          DOI: 10.1021/acsmedchemlett.8b00506

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  28 in total

1.  NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition.

Authors:  G K Amarasinghe; R N De Guzman; R B Turner; K J Chancellor; Z R Wu; M F Summers
Journal:  J Mol Biol       Date:  2000-08-11       Impact factor: 5.469

2.  Exciton interaction in molecular beacons: a sensitive sensor for short range modifications of the nucleic acid structure.

Authors:  S Bernacchi; Y Mély
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

3.  Specific recognition of primer tRNA Lys 3 by HIV-1 nucleocapsid protein: involvement of the zinc fingers and the N-terminal basic extension.

Authors:  Carine Tisné; Bernard P Roques; Frédéric Dardel
Journal:  Biochimie       Date:  2003-05       Impact factor: 4.079

4.  Predicting the binding mode of known NCp7 inhibitors to facilitate the design of novel modulators.

Authors:  Mattia Mori; Fabrizio Manetti; Maurizio Botta
Journal:  J Chem Inf Model       Date:  2010-12-20       Impact factor: 4.956

5.  Molecular dynamics and DFT study on HIV-1 nucleocapsid protein-7 in complex with viral genome.

Authors:  Mattia Mori; Ursula Dietrich; Fabrizio Manetti; Maurizio Botta
Journal:  J Chem Inf Model       Date:  2010-04-26       Impact factor: 4.956

6.  HIV-1 nucleocapsid protein activates transient melting of least stable parts of the secondary structure of TAR and its complementary sequence.

Authors:  Serena Bernacchi; Stoyl Stoylov; Etienne Piémont; Damien Ficheux; Bernard P Roques; Jean Luc Darlix; Yves Mély
Journal:  J Mol Biol       Date:  2002-03-29       Impact factor: 5.469

7.  Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis.

Authors:  Hervé Beltz; Céline Clauss; Etienne Piémont; Damien Ficheux; Robert J Gorelick; Bernard Roques; Caroline Gabus; Jean-Luc Darlix; Hugues de Rocquigny; Yves Mély
Journal:  J Mol Biol       Date:  2005-04-01       Impact factor: 5.469

8.  How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription.

Authors:  Sarah Bourbigot; Nick Ramalanjaona; Christian Boudier; Gilmar F J Salgado; Bernard P Roques; Yves Mély; Serge Bouaziz; Nelly Morellet
Journal:  J Mol Biol       Date:  2008-08-26       Impact factor: 5.469

9.  Potential intra- and intermolecular interactions involving the unique-5' region of the HIV-1 5'-UTR.

Authors:  Shardell Spriggs; Lianko Garyu; Ryan Connor; Michael F Summers
Journal:  Biochemistry       Date:  2008-12-09       Impact factor: 3.162

10.  The conserved N-terminal basic residues and zinc-finger motifs of HIV-1 nucleocapsid restrict the viral cDNA synthesis during virus formation and maturation.

Authors:  Ludovic Didierlaurent; Laurent Houzet; Zakia Morichaud; Jean-Luc Darlix; Marylène Mougel
Journal:  Nucleic Acids Res       Date:  2008-07-18       Impact factor: 16.971

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  5 in total

1.  5,6-Dihydroxypyrimidine Scaffold to Target HIV-1 Nucleocapsid Protein.

Authors:  Savina Malancona; Mattia Mori; Paola Fezzardi; Marisabella Santoriello; Andreina Basta; Martina Nibbio; Lesia Kovalenko; Roberto Speziale; Maria Rosaria Battista; Antonella Cellucci; Nadia Gennari; Edith Monteagudo; Annalise Di Marco; Alessia Giannini; Rajhans Sharma; Manuel Pires; Eleonore Real; Maurizio Zazzi; Maria Chiara Dasso Lang; Davide De Forni; Francesco Saladini; Yves Mely; Vincenzo Summa; Steven Harper; Maurizio Botta
Journal:  ACS Med Chem Lett       Date:  2020-03-19       Impact factor: 4.345

2.  Synthesis of distal and proximal fleximer base analogues and evaluation in the nucleocapsid protein of HIV-1.

Authors:  Therese Ku; Natalie Lopresti; Matthew Shirley; Mattia Mori; Jan Marchant; Xiao Heng; Maurizio Botta; Michael F Summers; Katherine L Seley-Radtke
Journal:  Bioorg Med Chem       Date:  2019-05-15       Impact factor: 3.641

3.  Inhibitory Effect of Lithospermic Acid on the HIV-1 Nucleocapsid Protein.

Authors:  Mattia Mori; Stefano Ciaco; Yves Mély; Anastasia Karioti
Journal:  Molecules       Date:  2020-11-20       Impact factor: 4.411

4.  Novel Insights on Human Carbonic Anhydrase Inhibitors Based on Coumalic Acid: Design, Synthesis, Molecular Modeling Investigation, and Biological Studies.

Authors:  Virginia Pontecorvi; Mattia Mori; Francesca Picarazzi; Susi Zara; Simone Carradori; Amelia Cataldi; Andrea Angeli; Emanuela Berrino; Paola Chimenti; Alessia Ciogli; Daniela Secci; Paolo Guglielmi; Claudiu T Supuran
Journal:  Int J Mol Sci       Date:  2022-07-19       Impact factor: 6.208

5.  Benzoxaboroles-Novel Autotaxin Inhibitors.

Authors:  Kristina Kraljić; Dubravko Jelić; Dinko Žiher; Adam Cvrtila; Snježana Dragojević; Verona Sinković; Milan Mesić
Journal:  Molecules       Date:  2019-09-20       Impact factor: 4.411

  5 in total

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