| Literature DB >> 30993792 |
Stephanie M Bester1, Kaylin A Adipietro2, Vanessa L Funk3, James M Myslinski3, Nicholas D Keul4, Jonah Cheung5, Paul T Wilder2, Zachary A Wood4, David J Weber2, Jude J Height3, Scott D Pegan1,3,6.
Abstract
Serving a critical role in neurotransmission, human acetylcholinesterase (hAChE) is the target of organophosphate nerve agents. Hence, there is an active interest in studying the mechanism of inhibition and recovery of enzymatic activity, which could lead to better countermeasures against nerve agents. As hAChE is found in different oligomeric assemblies, certain approaches to studying it have been problematic. Herein, we examine the biochemical and structural impact of monomerizing hAChE by using two mutations: L380R/F535K. The activities of monomeric hAChE L380R/F535K and dimeric hAChE were determined to be comparable utilizing a modified Ellman's assay. To investigate the influence of subunit-subunit interactions on the structure of hAChE, a 2.1 Å X-ray crystallographic structure was determined. Apart from minor shifts along the dimer interface, the overall structure of the hAChE L380R/F535K mutant is similar to that of dimeric hAChE. To probe whether the plasticity of the active site was overtly impacted by monomerizing hAChE, the kinetic constants of (PR/S ) - VX (ethyl({2-[bis(propan-2-yl)amino]ethyl}sulfanyl)(methyl)phosphinate) inhibition and subsequent rescue of hAChE L380R/F535K activity with HI-6 (1-(2'-hydroxyiminomethyl-1'-pyridinium)-3-(4'-carbamoyl-1-pyridinium)) were determined and found to be comparable to those of dimeric hAChE. Thus, hAChE L380R/F535K could be used as a substitute for dimeric hAChE when experimentally probing the ability of the hAChE active site to accommodate future nerve agent threats or judge the ability of new therapeutics to access the active site.Entities:
Keywords: acetylcholinesterase; nerve agent; oligomerization; organophosphate
Year: 2019 PMID: 30993792 PMCID: PMC6856767 DOI: 10.1002/pro.3625
Source DB: PubMed Journal: Protein Sci ISSN: 0961-8368 Impact factor: 6.725
Enzymatic Activity of Dimeric hAChE and hAChE L380R/F535K
| Monomer | Dimer | |
|---|---|---|
|
| 1.0 × 10−9 | 9.26 × 10−10 |
|
| 70 ± 3 | 93 ± 3 |
|
| 8.6 ± 1.3 × 10−5 | 7.7 ± 1.0 × 10−5 |
|
| 6.9 ± 0.3 × 10−8 | 8.6 ± 0.3 × 10−8 |
Data Collection and Refinement Statistics (PDB 6O69)
|
| |
| Space group | P 65 2 2 |
| Cell dimensions | |
|
| 115.8, 115.8, 191.9 |
|
| 90.0, 90.0, 120.0 |
| Resolution (Å) | 50.0–2.09 (2.13–2.09) |
| Completeness (%) | 99.6 (100) |
| CC1/2 | 0.977 (0.814) |
|
| 5.4 (32.6) |
|
| 11.1 (2.4) |
| Redundancy | 12.7 (12.7) |
|
| |
| Resolution (Å) | 43.3–2.08 |
| No. of reflections | 45,954 |
|
| 18.5/22.0 |
| No. of atoms | |
| Protein | 4138 |
| Ligand/ion | 38 |
| Water | 259 |
| B factors | |
| Protein | 49.4 |
| Ligand/ion | 97.7 |
| Water | 52.2 |
| RMS deviations | |
| Bond lengths (Å) | 0.015 |
| Bond angles (°) | 1.07 |
Data for the last resolution shell are provided in parentheses.
R work and R free = h[|F(h)obs| − |F(h)calc|]/h|F(h)obs| for reflections corresponding to the working and test sets.
Figure 1Comparison of the crystal lattice of hAChE L380R/F535K and dimeric hAChE. The asymmetric unit of the (a) monomeric (orange) (PDB 6O69) and (b) dimeric hAChE (2 subunits: baby blue, green) (PDB 4EY4) surrounded by symmetric mates (white/bluish white and light blue/light gray). The dimer interface of hAChE is depicted in aqua.
Figure 2Global structural comparison of monomeric hAChE L380R/F535K and dimeric hAChE. (a) Structural overlay of monomeric (orange) (PDB 6O69) and dimeric hAChE (PDB 4EY4) (2 subunits: baby blue, green). (b/c) close‐up overlays of the two mutation sites on hAChE L380R/F535K compared to the dimer. The colored arrows denote the mutation sites, and the rose‐colored circle indicates the active site. (d) A line graph of the root‐mean‐square deviation of monomeric hAChE alpha carbons when measured against dimer hAChE. αF′3 denotes the L380R mutated αF′3 helix, while αH highlights the F535K mutated αH helix. Loop and acyl loop label the 491–499 loop and acyl loop residues, respectively. The black lines emphasize the active site residues.
Figure 3Comparison of the 491–499 loop of monomeric hAChE L380R/F535K and dimeric hAChE. View of 2F o–F c density scaled to 1σ (light blue mesh) for the 491–499 loop of the monomeric (orange) (PDB 6O69) compared to the same loop in dimeric hAChE (baby blue) (PDB 4EY4). The structures are superimposed using least‐squares fit of residues 176–232 of each subunit. The black, orange, and blue letters are for labeling both, monomeric, and dimeric residues, respectively.
Figure 4Comparison of the active sites and acyl loop of monomeric hAChE L380R/F535K and dimeric hAChE. The structures of monomeric (orange) (PDB 6O69) and dimeric hAChE (baby blue) (PDB 4EY4) are superimposed using least‐squares fit of residues 176–232 of each subunit. The hAChE residues are indicated by black letters. The acyl loop is outlined with a teal dashed line and labeled in teal letters.
Inhibition of hAChE
| hAChE | OP |
|
|
|
|---|---|---|---|---|
| Monomer | (PR/S) – VX | 2.2 × 10−1 | 2.9 × 10−9 | 7.9 × 107 |
| Dimer | (PR/S) – VX | 4.5 × 10−2 | 5.9 × 10−10 | 7.7 × 107 |
From Ref. 18.
Reactivation of Inhibited hAChE by HI‐6
|
|
|
| max% | ||
|---|---|---|---|---|---|
| Monomer | (PR/S) – VX | 0.30 ± 0.08 | 19.9 ± 7.0 | 0.02 ± 0.01 | >100 |
| Dimer | (PR/S) – VX | 0.63 ± 0.04 | 7.50 ± 2.1 | 0.08 ± 0.02 | >100 |
| Dimer | (PS) – VX | 0.71 ± 0.06 | 23.3 ± 8.0 | 0.03 ± 0.01 | 92 |
From Ref. 18.