Literature DB >> 30986087

Biophysical Techniques in Structural Biology.

Christopher M Dobson1.   

Abstract

Over the past six decades, steadily increasing progress in the application of the principles and techniques of the physical sciences to the study of biological systems has led to remarkable insights into the molecular basis of life. Of particular significance has been the way in which the determination of the structures and dynamical properties of proteins and nucleic acids has so often led directly to a profound understanding of the nature and mechanism of their functional roles. The increasing number and power of experimental and theoretical techniques that can be applied successfully to living systems is now ushering in a new era of structural biology that is leading to fundamentally new information about the maintenance of health, the origins of disease, and the development of effective strategies for therapeutic intervention. This article provides a brief overview of some of the most powerful biophysical methods in use today, along with references that provide more detailed information about recent applications of each of them. In addition, this article acts as an introduction to four authoritative reviews in this volume. The first shows the ways that a multiplicity of biophysical methods can be combined with computational techniques to define the architectures of complex biological systems, such as those involving weak interactions within ensembles of molecular components. The second illustrates one aspect of this general approach by describing how recent advances in mass spectrometry, particularly in combination with other techniques, can generate fundamentally new insights into the properties of membrane proteins and their functional interactions with lipid molecules. The third reviewdemonstrates the increasing power of rapidly evolving diffraction techniques, employing the very short bursts of X-rays of extremely high intensity that are now accessible as a result of the construction of free-electron lasers, in particular to carry out time-resolved studies of biochemical reactions. The fourth describes in detail the application of such approaches to probe the mechanism of the light-induced changes associated with bacteriorhodopsin's ability to convert light energy into chemical energy.

Entities:  

Keywords:  MS; X-ray crystallography; X-ray free-electron laser; XFEL; biophysical techniques; cryo-EM; cryo–electron microscopy; integrative structure modeling; mass spectrometry; time-resolved structural studies

Mesh:

Substances:

Year:  2019        PMID: 30986087     DOI: 10.1146/annurev-biochem-013118-111947

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  7 in total

1.  Computational Study on the Dynamics of Mycobacterium Tuberculosis RNA Polymerase Assembly.

Authors:  Sneha Bheemireddy; Narayanaswamy Srinivasan
Journal:  Methods Mol Biol       Date:  2022

Review 2.  Beyond history and "on a roll": The list of the most well-studied human protein structures and overall trends in the protein data bank.

Authors:  Zhen-Lu Li; Matthias Buck
Journal:  Protein Sci       Date:  2021-03-04       Impact factor: 6.725

Review 3.  Double Mutant Cycles as a Tool to Address Folding, Binding, and Allostery.

Authors:  Livia Pagano; Angelo Toto; Francesca Malagrinò; Lorenzo Visconti; Per Jemth; Stefano Gianni
Journal:  Int J Mol Sci       Date:  2021-01-15       Impact factor: 5.923

Review 4.  Easy Synthesis of Complex Biomolecular Assemblies: Wheat Germ Cell-Free Protein Expression in Structural Biology.

Authors:  Marie-Laure Fogeron; Lauriane Lecoq; Laura Cole; Matthias Harbers; Anja Böckmann
Journal:  Front Mol Biosci       Date:  2021-03-25

Review 5.  From systems to structure - using genetic data to model protein structures.

Authors:  Hannes Braberg; Ignacia Echeverria; Robyn M Kaake; Andrej Sali; Nevan J Krogan
Journal:  Nat Rev Genet       Date:  2022-01-10       Impact factor: 59.581

6.  Challenges in describing the conformation and dynamics of proteins with ambiguous behavior.

Authors:  Joel Roca-Martinez; Tamas Lazar; Jose Gavalda-Garcia; David Bickel; Rita Pancsa; Bhawna Dixit; Konstantina Tzavella; Pathmanaban Ramasamy; Maite Sanchez-Fornaris; Isel Grau; Wim F Vranken
Journal:  Front Mol Biosci       Date:  2022-08-03

7.  Heterodimer Formation of the Homodimeric ABC Transporter OpuA.

Authors:  Patricia Alvarez-Sieiro; Hendrik R Sikkema; Bert Poolman
Journal:  Int J Mol Sci       Date:  2021-05-31       Impact factor: 5.923

  7 in total

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