Literature DB >> 30976985

Age estimation based on different molecular clocks in several tissues and a multivariate approach: an explorative study.

Julia Becker1, Nina Sophia Mahlke2, A Reckert1, S B Eickhoff3,4, S Ritz-Timme1.   

Abstract

Several molecular modifications accumulate in the human organism with increasing age. Some of these "molecular clocks" in DNA and in proteins open up promising approaches for the development of methods for forensic age estimation. A natural limitation of these methods arises from the fact that the chronological age is determined only indirectly by analyzing defined molecular changes that occur during aging. These changes are not linked exclusively to the expired life span but may be influenced significantly by intrinsic and extrinsic factors in the complex process of individual aging. We tested the hypothesis that a combined use of different molecular clocks in different tissues results in more precise age estimates because this approach addresses the complex aging processes in a more comprehensive way. Two molecular clocks (accumulation of D-aspartic acid (D-Asp), accumulation of pentosidine (PEN)) in two different tissues (annulus fibrosus of intervertebral discs and elastic cartilage of the epiglottis) were analyzed in 95 cases, and uni- and multivariate models for age estimation were generated. The more parameters were included in the models for age estimation, the smaller the mean absolute errors (MAE) became. While the MAEs were 7.5-11.0 years in univariate models, a multivariate model based on the two protein clocks in the two tissues resulted in a MAE of 4.0 years. These results support our hypothesis. The tested approach of a combined analysis of different molecular clocks analyzed in different tissues opens up new possibilities in postmortem age estimation. In a next step, we will add the epigenetic clock (DNA methylation) to our protein clocks (PEN, D-Asp) and expand our set of tissues.

Entities:  

Keywords:  Age estimation; Age prediction model; D-Aspartic acid; Machine learning; Molecular clocks; Pentosidine

Year:  2019        PMID: 30976985     DOI: 10.1007/s00414-019-02054-9

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  61 in total

1.  Age estimation based on aspartic acid racemization in human sclera.

Authors:  Karolin Klumb; Christian Matzenauer; Alexandra Reckert; Klaus Lehmann; Stefanie Ritz-Timme
Journal:  Int J Legal Med       Date:  2015-08-25       Impact factor: 2.686

Review 2.  Advanced glycation end products, diabetes and ageing.

Authors:  N Nass; B Bartling; A Navarrete Santos; R J Scheubel; J Börgermann; R E Silber; A Simm
Journal:  Z Gerontol Geriatr       Date:  2007-10       Impact factor: 1.281

3.  Independent validation of DNA-based approaches for age prediction in blood.

Authors:  Sohee Cho; Sang-Eun Jung; Sae Rom Hong; Eun Hee Lee; Ji Hyun Lee; Soong Deok Lee; Hwan Young Lee
Journal:  Forensic Sci Int Genet       Date:  2017-04-28       Impact factor: 4.882

4.  Chronological age prediction based on DNA methylation: Massive parallel sequencing and random forest regression.

Authors:  Jana Naue; Huub C J Hoefsloot; Olaf R F Mook; Laura Rijlaarsdam-Hoekstra; Marloes C H van der Zwalm; Peter Henneman; Ate D Kloosterman; Pernette J Verschure
Journal:  Forensic Sci Int Genet       Date:  2017-08-01       Impact factor: 4.882

Review 5.  Applications of physiological bases of ageing to forensic sciences. Estimation of age-at-death.

Authors:  Sara C Zapico; Douglas H Ubelaker
Journal:  Ageing Res Rev       Date:  2013-02-27       Impact factor: 10.895

6.  Analysis of advanced glycation end products (AGEs) in dentine: useful for age estimation?

Authors:  Florian Greis; Alexandra Reckert; Katinka Fischer; Stefanie Ritz-Timme
Journal:  Int J Legal Med       Date:  2017-09-13       Impact factor: 2.686

Review 7.  Advanced glycation end products and diabetic complications.

Authors:  Alan W Stitt; Alicia J Jenkins; Mark E Cooper
Journal:  Expert Opin Investig Drugs       Date:  2002-09       Impact factor: 6.206

8.  Advanced glycoxidation end products in commonly consumed foods.

Authors:  Teresia Goldberg; Weijing Cai; Melpomeni Peppa; Veronique Dardaine; Bantwal Suresh Baliga; Jaime Uribarri; Helen Vlassara
Journal:  J Am Diet Assoc       Date:  2004-08

9.  Contents of pentosidine in the tissue of the intervertebral disc as an indicator of the human age.

Authors:  A Pillin; F Pudil; V Bencko; D Bezdícková
Journal:  Soud Lek       Date:  2007-10

Review 10.  Effect of DNA Methylation in Various Diseases and the Probable Protective Role of Nutrition: A Mini-Review.

Authors:  Venkataramana Kandi; Sabitha Vadakedath
Journal:  Cureus       Date:  2015-08-24
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  5 in total

1.  DNA methylation levels and telomere length in human teeth: usefulness for age estimation.

Authors:  Ana Belén Márquez-Ruiz; Lucas González-Herrera; Juan de Dios Luna; Aurora Valenzuela
Journal:  Int J Legal Med       Date:  2020-01-02       Impact factor: 2.686

2.  Postmortem age estimation via DNA methylation analysis in buccal swabs from corpses in different stages of decomposition-a "proof of principle" study.

Authors:  Barbara Elisabeth Koop; Felix Mayer; Tanju Gündüz; Jacqueline Blum; Julia Becker; Judith Schaffrath; Wolfgang Wagner; Yang Han; Petra Boehme; Stefanie Ritz-Timme
Journal:  Int J Legal Med       Date:  2020-07-07       Impact factor: 2.686

3.  Analysis of 14C, 13C and Aspartic Acid Racemization in Teeth and Bones to Facilitate Identification of Unknown Human Remains: Outcomes of Practical Casework.

Authors:  Rebecka Teglind; Irena Dawidson; Jonas Balkefors; Kanar Alkass
Journal:  Biomolecules       Date:  2021-11-08

4.  Molecular clocks in ancient proteins: Do they reflect the age at death even after millennia?

Authors:  Nina Sophia Mahlke; Silvia Renhart; Dorothea Talaa; Alexandra Reckert; Stefanie Ritz-Timme
Journal:  Int J Legal Med       Date:  2021-02-17       Impact factor: 2.686

5.  Gray matter volume and estimated brain age gap are not linked with sleep-disordered breathing.

Authors:  Bahram Mohajer; Nooshin Abbasi; Esmaeil Mohammadi; Habibolah Khazaie; Ricardo S Osorio; Ivana Rosenzweig; Claudia R Eickhoff; Mojtaba Zarei; Masoud Tahmasian; Simon B Eickhoff
Journal:  Hum Brain Mapp       Date:  2020-04-02       Impact factor: 5.038

  5 in total

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