| Literature DB >> 30972968 |
Yuxin Qi1,2, Feimeng An1,2, Jiaqi Wang1,2, Yuan Liu1,2, Hongyan Gao2, Zhe Ge3, Enze Jiang4, Donggao Cai5, Jianping Shi1, Jianzhong Wang2.
Abstract
BACKGROUND: Osteoarthritis (OA) is usually recognized to have a genetic factor, and in our study, we performed a case-control study to analyze the association between 14 single nucleotide polymorphisms (SNPs) in OPG and the risk of knee OA in a Chinese Han population.Entities:
Keywords: zzm321990OPGzzm321990; Chinese people; gene polymorphisms; knee osteoarthritis
Mesh:
Substances:
Year: 2019 PMID: 30972968 PMCID: PMC6565555 DOI: 10.1002/mgg3.662
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Characteristics of cases and controls in this study
| Variable | Cases( | Controls( |
|
|---|---|---|---|
| Sex | <0.001 | ||
| Male | 132 | 397 | |
| Female | 261 | 103 | |
| Age, year(mean ± | 60.89 ± 4.78 | 47.37 ± 9.92 | <0.001 |
p values were calculated from Pearson's chi‐squared test.
Examined SNPs examined in the OPG gene
| SNP | Chromosome | Position | Allele | Minor allele frequency | HWE | OR (95% CI) |
| |
|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||
| rs10955911 | 8 | 119937741 | A/G | 0.116 | 0.134 | 0.4395 | 0.846 (0.637–1.124) | 0.249 |
| rs3134053 | 8 | 119946141 | T/C | 0.313 | 0.294 | 0.3725 | 1.096 (0.891–1.347) | 0.387 |
| rs11573896 | 8 | 119947430 | A/T | 0.125 | 0.133 | 0.6969 | 0.930 (0.703–1.229) | 0.606 |
| rs1485286 | 8 | 119950668 | T/C | 0.436 | 0.381 | 0.3429 | 1.258 (1.040–1.522) | 0.018 |
| rs3102725 | 8 | 119951005 | A/G | 0.151 | 0.155 | 1 | 0.973 (0.750–1.261) | 0.834 |
| rs1905786 | 8 | 119951692 | T/C | 0.311 | 0.242 | 0.9029 | 1.415 (1.148–1.745) | 0.001 |
| rs1032128 | 8 | 119951773 | G/A | 0.439 | 0.382 | 0.1557 | 1.267 (1.048–1.532) | 0.015 |
| rs3134056 | 8 | 119952212 | G/A | 0.368 | 0.440 | 0.7857 | 0.740 (0.611–0.896) | 0.002 |
| rs3134058 | 8 | 119954108 | G/A | 0.472 | 0.410 | 0.7816 | 1.287 (1.066–1.554) | 0.009 |
| rs11573856 | 8 | 119954995 | A/G | 0.149 | 0.175 | 0.2161 | 0.822 (0.637–1.062) | 0.133 |
| rs11573849 | 8 | 119956378 | T/G | 0.160 | 0.151 | 0.1616 | 1.073 (0.830–1.389) | 0.59 |
| rs3102731 | 8 | 119959389 | A/G | 0.152 | 0.157 | 1 | 0.961 (0.742–1.245) | 0.762 |
| rs11573828 | 8 | 119959813 | T/C | 0.161 | 0.147 | 0.213 | 1.107 (0.854–1.435) | 0.442 |
| rs1564861 | 8 | 119965909 | C/A | 0.369 | 0.449 | 0.7173 | 0.718 (0.593–0.869) | 0.00066 |
95% CI: 95% confidence interval; HWE: Hardy–Weinberg equilibrium; OR: odds ratio.
p values were calculated from chi‐squared test/Fisher's exact test.
p ≤ 0.05 indicates statistical significance.
Association between SNPs and knee OA in multiple inheritance models
| SNP | Model | Genotype | Group = control | Group = case | Without adjustment | With adjustment | ||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| |||||
| rs1485286 | Codominant | C/C | 186 (37.3%) | 131 (33.4%) | 1 | 0.016 | 1 | 0.026 |
| C/T | 246 (49.3%) | 180 (45.9%) | 1.04 (0.77–1.40) | 0.97 (0.61–1.54) | ||||
| T/T | 67 (13.4%) | 81 (20.7%) | 1.72 (1.16–2.54) | 2.13 (1.14–3.98) | ||||
| Dominant | C/C | 186 (37.3%) | 131 (33.4%) | 1 | 0.23 | 1 | 0.41 | |
| C/T‐T/T | 313 (62.7%) | 261 (66.6%) | 1.18 (0.90–1.56) | 1.20 (0.78–1.85) | ||||
| Recessive | C/C‐C/T | 432 (86.6%) | 311 (79.3%) | 1 | 0.0041 | 1 | 0.007 | |
| T/T | 67 (13.4%) | 81 (20.7%) | 1.68 (1.18–2.39) | 2.16 (1.22–3.83) | ||||
| Overdominant | C/C‐T/T | 253 (50.7%) | 212 (54.1%) | 1 | 0.32 | 1 | 0.22 | |
| C/T | 246 (49.3%) | 180 (45.9%) | 0.87 (0.67–1.14) | 0.77 (0.50–1.17) | ||||
| Log‐additive | – | – | – | 1.26 (1.04–1.52) | 0.018 | 1.35 (1.00–1.82) | 0.046 | |
| rs1905786 | Codominant | C/C | 288 (57.6%) | 195 (49.7%) | 1 | 0.0028 | 1 | 0.077 |
| C/T | 182 (36.4%) | 150 (38.3%) | 1.22 (0.92–1.61) | 1.19 (0.76–1.85) | ||||
| T/T | 30 (6%) | 47 (12%) | 2.31 (1.41–3.79) | 2.49 (1.11–5.60) | ||||
| Dominant | C/C | 288 (57.6%) | 195 (49.7%) | 1 | 0.019 | 1 | 0.16 | |
| C/T‐T/T | 212 (42.4%) | 197 (50.3%) | 1.37 (1.05–1.79) | 1.35 (0.89–2.06) | ||||
| Recessive | C/C‐C/T | 470 (94%) | 345 (88%) | 1 | 0.0016 | 1 | 0.033 | |
| T/T | 30 (6%) | 47 (12%) | 2.13 (1.32–3.44) | 2.32 (1.05–5.12) | ||||
| Overdominant | C/C‐T/T | 318 (63.6%) | 242 (61.7%) | 1 | 0.57 | 1 | 0.8 | |
| C/T | 182 (36.4%) | 150 (38.3%) | 1.08 (0.82–1.42) | 1.06 (0.69–1.63) | ||||
| Log‐additive | – | – | – | 1.39 (1.13–1.71) | 0.0016 | 1.40 (1.01–1.94) | 0.045 | |
| rs1032128 | Codominant | A/A | 183 (36.7%) | 130 (33.1%) | 1 | 0.0076 | 1 | 0.023 |
| A/G | 251 (50.3%) | 181 (46.1%) | 1.02 (0.76–1.36) | 0.99 (0.62–1.56) | ||||
| G/G | 65 (13%) | 82 (20.9%) | 1.78 (1.20–2.64) | 2.18 (1.17–4.09) | ||||
| Dominant | A/A | 183 (36.7%) | 130 (33.1%) | 1 | 0.26 | 1 | 0.37 | |
| A/G‐G/G | 316 (63.3%) | 263 (66.9%) | 1.17 (0.89–1.55) | 1.22 (0.79–1.88) | ||||
| Recessive | A/A‐A/G | 434 (87%) | 311 (79.1%) | 1 | 0.0018 | 1 | 0.006 | |
| G/G | 65 (13%) | 82 (20.9%) | 1.76 (1.23–2.51) | 2.20 (1.24–3.90) | ||||
| Overdominant | A/A‐G/G | 248 (49.7%) | 212 (53.9%) | 1 | 0.21 | 1 | 0.22 | |
| A/G | 251 (50.3%) | 181 (46.1%) | 0.84 (0.65–1.10) | 0.77 (0.51–1.17) | ||||
| Log‐additive | – | – | – | 1.27 (1.05–1.54) | 0.014 | 1.37 (1.01–1.84) | 0.039 | |
| rs3134056 | Codominant | A/A | 155 (31%) | 158 (40.2%) | 1 | 0.0078 | 1 | 0.89 |
| A/G | 250 (50%) | 181 (46.1%) | 0.71 (0.53–0.95) | 0.89 (0.56–1.41) | ||||
| G/G | 95 (19%) | 54 (13.7%) | 0.56 (0.37–0.83) | 0.94 (0.50–1.77) | ||||
| Dominant | A/A | 155 (31%) | 158 (40.2%) | 1 | 0.0043 | 1 | 0.65 | |
| A/G‐G/G | 345 (69%) | 235 (59.8%) | 0.67 (0.51–0.88) | 0.90 (0.59–1.40) | ||||
| Recessive | A/A‐A/G | 405 (81%) | 339 (86.3%) | 1 | 0.035 | 1 | 0.99 | |
| G/G | 95 (19%) | 54 (13.7%) | 0.68 (0.47–0.98) | 1.00 (0.57–1.78) | ||||
| Overdominant | A/A‐G/G | 250 (50%) | 212 (53.9%) | 1 | 0.24 | 1 | 0.65 | |
| A/G | 250 (50%) | 181 (46.1%) | 0.85 (0.66–1.11) | 0.91 (0.60–1.38) | ||||
| Log‐additive | – | – | – | 0.74 (0.61–0.90) | 0.002 | 0.95 (0.71–1.29) | 0.76 | |
| rs3134058 | Codominant | A/A | 172 (34.5%) | 121 (30.8%) | 1 | 0.0056 | 1 | 0.73 |
| A/G | 245 (49.1%) | 173 (44%) | 1.00 (0.74–1.36) | 0.95 (0.59–1.52) | ||||
| G/G | 82 (16.4%) | 99 (25.2%) | 1.72 (1.18–2.49) | 1.18 (0.66–2.12) | ||||
| Dominant | A/A | 172 (34.5%) | 121 (30.8%) | 1 | 0.24 | 1 | 0.94 | |
| A/G‐G/G | 327 (65.5%) | 272 (69.2%) | 1.18 (0.89–1.57) | 1.02 (0.65–1.58) | ||||
| Recessive | A/A‐A/G | 417 (83.6%) | 294 (74.8%) | 1 | 0.0013 | 1 | 0.45 | |
| G/G | 82 (16.4%) | 99 (25.2%) | 1.71 (1.23–2.38) | 1.22 (0.73–2.04) | ||||
| Overdominant | A/A‐G/G | 254 (50.9%) | 220 (56%) | 1 | 0.13 | 1 | 0.58 | |
| A/G | 245 (49.1%) | 173 (44%) | 0.82 (0.63–1.06) | 0.89 (0.59–1.35) | ||||
| Log‐additive | – | – | – | 1.27 (1.06–1.53) | 0.01 | 1.07 (0.81–1.43) | 0.63 | |
| rs11573828 | Codominant | C/C | 356 (71.9%) | 282 (71.9%) | 1 | 0.036 | 1 | 0.13 |
| C/T | 132 (26.7%) | 94 (24%) | 0.90 (0.66–1.22) | 0.75 (0.46–1.21) | ||||
| T/T | 7 (1.4%) | 16 (4.1%) | 2.89 (1.17–7.11) | 2.68 (0.71–10.10) | ||||
| Dominant | C/C | 356 (71.9%) | 282 (71.9%) | 1 | 0.99 | 1 | 0.48 | |
| C/T‐T/T | 139 (28.1%) | 110 (28.1%) | 1.00 (0.74–1.34) | 0.85 (0.54–1.35) | ||||
| Recessive | C/C‐C/T | 488 (98.6%) | 376 (95.9%) | 1 | 0.013 | 1 | 0.1 | |
| T/T | 7 (1.4%) | 16 (4.1%) | 2.97 (1.21–7.28) | 2.89 (0.77–10.82) | ||||
| Overdominant | C/C‐T/T | 363 (73.3%) | 298 (76%) | 1 | 0.36 | 1 | 0.17 | |
| C/T | 132 (26.7%) | 94 (24%) | 0.87 (0.64–1.18) | 0.72 (0.45–1.16) | ||||
| Log‐additive | – | – | – | 1.10 (0.85–1.43) | 0.45 | 0.99 (0.66–1.46) | 0.94 | |
| rs1564861 | Codominant | A/A | 149 (29.9%) | 149 (29.9%) | 1 | 0.0027 | 1 | 0.85 |
| A/C | 252 (50.5%) | 252 (50.5%) | 0.69 (0.51–0.92) | 0.87 (0.55–1.39) | ||||
| C/C | 98 (19.6%) | 98 (19.6%) | 0.52 (0.35–0.78) | 0.92 (0.49–1.72) | ||||
| Dominant | A/A | 149 (29.9%) | 149 (29.9%) | 1 | 0.0017 | 1 | 0.58 | |
| A/C‐C/C | 350 (70.1%) | 350 (70.1%) | 0.64 (0.48–0.85) | 0.88 (0.57–1.37) | ||||
| Recessive | A/A‐A/C | 401 (80.4%) | 401 (80.4%) | 1 | 0.019 | 1 | 0.97 | |
| C/C | 98 (19.6%) | 98 (19.6%) | 0.65 (0.45–0.94) | 0.99 (0.56–1.75) | ||||
| Overdominant | A/A‐C/C | 247 (49.5%) | 247 (49.5%) | 1 | 0.21 | 1 | 0.62 | |
| A/C | 252 (50.5%) | 252 (50.5%) | 0.85 (0.65–1.10) | 0.90 (0.59–1.36) | ||||
| Log‐additive | – | – | – | 0.72 (0.59–0.87) | 0.0006 | 0.94 (0.69–1.27) | 0.69 | |
| rs3134053 | Codominant | C/C | 236 (50.8%) | 194 (49.7%) | 1 | 0.4 | 1 | 0.077 |
| C/T | 185 (39.8%) | 148 (38%) | 0.97 (0.73–1.30) | 0.60 (0.38–0.95) | ||||
| T/T | 44 (9.5%) | 48 (12.3%) | 1.33 (0.85–2.08) | 0.97 (0.48–1.96) | ||||
| Dominant | C/C | 236 (50.8%) | 194 (49.7%) | 1 | 0.77 | 1 | 0.066 | |
| C/T‐T/T | 229 (49.2%) | 196 (50.3%) | 1.04 (0.80–1.36) | 0.67 (0.44–1.03) | ||||
| Recessive | C/C‐C/T | 421 (90.5%) | 342 (87.7%) | 1 | 0.18 | 1 | 0.55 | |
| T/T | 44 (9.5%) | 48 (12.3%) | 1.34 (0.87–2.07) | 1.22 (0.63–2.39) | ||||
| Overdominant | C/C‐T/T | 280 (60.2%) | 242 (62%) | 1 | 0.58 | 1 | 0.024 | |
| C/T | 185 (39.8%) | 148 (38%) | 0.93 (0.70–1.22) | 0.61 (0.39–0.94) | ||||
| Log‐additive | – | – | – | 1.09 (0.89–1.33) | 0.41 | 0.84 (0.62–1.15) | 0.28 | |
| rs11573849 | Codominant | G/G | 356 (71.2%) | 283 (72%) | 1 | 0.028 | 1 | 0.092 |
| G/T | 137 (27.4%) | 94 (23.9%) | 0.86 (0.64–1.17) | 0.71 (0.44–1.14) | ||||
| T/T | 7 (1.4%) | 16 (4.1%) | 2.88 (1.17–7.08) | 2.68 (0.71–10.14) | ||||
| Dominant | G/G | 356 (71.2%) | 283 (72%) | 1 | 0.79 | 1 | 0.36 | |
| G/T‐T/T | 144 (28.8%) | 110 (28%) | 0.96 (0.72–1.29) | 0.81 (0.51–1.28) | ||||
| Recessive | G/G‐G/T | 493 (98.6%) | 377 (95.9%) | 1 | 0.012 | 1 | 0.096 | |
| T/T | 7 (1.4%) | 16 (4.1%) | 2.99 (1.22–7.34) | 2.94 (0.78–11.03) | ||||
| Overdominant | G/G‐T/T | 363 (72.6%) | 299 (76.1%) | 1 | 0.24 | 1 | 0.11 | |
| G/T | 137 (27.4%) | 94 (23.9%) | 0.83 (0.61–1.13) | 0.68 (0.43–1.10) | ||||
| Log‐additive | – | – | – | 1.07 (0.83–1.39) | 0.59 | 0.95 (0.64–1.41) | 0.8 | |
CI: confidence interval; OR: odds ratio.
p ≤ 0.05 indicates statistical, significance.
OPG haplotype frequencies and the association with the risk of knee OA in cases and controls
| Block ID | SNPs | Haplotype | Haplotype frequencies | Without adjustment | With adjustment | |||
|---|---|---|---|---|---|---|---|---|
| Case | Control | OR (95% CI) |
| OR (95% CI) |
| |||
| 1 | rs10955911, rs3134053, rs11573896, rs1485286, rs3102725, rs1905786, rs1032128 | GCTCGCA | 0.245 | 0.317 | 1.71 (1.32–2.23) | 0.0001 | 1.44 (0.95–2.19) | 0.084 |
| GCTTGTG | 0.307 | 0.24 | 1.51 (1.10–2.06) | 0.01 | 1.15 (0.71–1.87) | 0.56 | ||
| GTTCGCA | 0.159 | 0.144 | 1.32 (0.97–1.80) | 0.074 | 0.87 (0.54–1.41) | 0.57 | ||
| GTTCACA | 0.147 | 0.147 | 1.13 (0.80–1.57) | 0.49 | 1.03 (0.62–1.72) | 0.91 | ||
| ACATGCG | 0.103 | 0.103 | 5.90 (2.11–16.47) | 0.0007 | 7.51 (1.66–33.88) | 0.0089 | ||
| GCATGCG | 0.103 | 0.005 | 1.26 (0.57–2.80) | 0.57 | 1.68 (0.50–5.70) | 0.4 | ||
| 2 | rs3134056, rs3134058, rs11573856, rs11573849, rs3102731, rs11573828, rs1564861 | AGGGGCA | 0.32 | 0.252 | 1 | 0.0021 | 1 | – |
| GAGGGCC | 0.219 | 0.263 | 0.67 (0.52–0.86) | 0.0069 | 0.77 (0.52–1.15) | 0.21 | ||
| GAAGGCC | 0.149 | 0.149 | 0.66 (0.49–0.89) | 0.092 | 0.79 (0.50–1.27) | 0.33 | ||
| AGGGACA | 0.152 | 0.152 | 0.78 (0.58–1.04) | 0.6 | 0.62 (0.39–0.98) | 0.041 | ||
| AAGTGTA | 0.159 | 0.141 | 0.92 (0.69–1.24) | 0.018 | 0.84 (0.53–1.32) | 0.44 | ||
95% CI: 95% confidence interval; OR: odds ratio.
p ≤ 0.05 indicates statistical significance.
Figure 1Linkage disequilibrium (LD) of polymorphic sites in the OPG on chromosome 8. The LD pattern was analyzed using the parameters D'