| Literature DB >> 30964606 |
Yanyun Zhu1,2, Yi Zhang1,2, Jiangbo Zhan1,2, Ying Lin1,2, Xiaorong Yang1,2.
Abstract
Laccase is a multi-copper oxidase which oxidizes substrate at the type 1 copper site, simultaneously coupling the reduction of dioxygen to water at the trinuclear copper center. In this study, we used site-directed mutagenesis to study the effect of axial bonds between the metal and amino acid residue side chains in lacTT. Our kinetic and spectral data showed that the replacement of the axial residue with non-coordinating residues resulted in higher efficiency (kcat /Km ) and a lower Cu2+ population at the type 1 copper site, while substitution with strongly coordinating residues resulted in lower efficiency and a higher Cu2+ population, as compared with the wild-type. The redox potentials of mutants with hydrophobic axial residues (Ala and Phe) were higher than that of the wild-type. In conclusion, these insights into the catalytic mechanism of laccase may be of use in protein engineering to fine-tune its enzymatic properties for industrial application.Entities:
Keywords: axial bond; copper; kinetic analysis; laccase; redox potential; site-directed mutation
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Substances:
Year: 2019 PMID: 30964606 PMCID: PMC6487685 DOI: 10.1002/2211-5463.12633
Source DB: PubMed Journal: FEBS Open Bio ISSN: 2211-5463 Impact factor: 2.693
Redox potentials of the T1 Cu site for oxidases from different sources
| Source | Species | Enzyme | Axial ligand |
|
|---|---|---|---|---|
|
| Fungus | Laccase | Phe | 790 |
|
| Fungus | Laccase | Phe | 760 |
|
| Fungus | Laccase | Leu | 550 |
|
| Fungus | Laccase | Leu | 470 |
|
| Bacterium | Laccase | Met | 455 |
|
| Bacterium | Azurin | Met | 310 |
|
| Plant | Laccase | Met | 430 |
|
| Plant | Ascorbic oxidase | Met | 340 |
| Homo sapiens | Mammal | Ceruloplasmin | Met | 490 |
Figure 1(A) The 3D structure model of lacTT containing three domains and four Cu atoms. (B) The coordination environment of the T1 Cu site. The T1 Cu atom is coordinated by the C460, H455 and C450 ligands; at its axial position, the fourth ligand, M460, weakly interacts with the Cu atom, forming the S et–Cu bond.
Figure 2(A, B) Effect of temperature on the activity of the WT lacTT and mutants M460L, M460F and M460A (A), and M460H and M460Q (B). (C, D) Thermostability curves of the WT lacTT and mutants at 80 °C, pH 6.0. The residual activity was determined after incubation for 0–4 h at 90 °C. Laccase activity was normalized to the optimum activity value. (E, F) Effect of pH on the activity of wild‐type lacTT and mutants. Activities were measured in 0.1 m Na2 HPO 4/KH 2 PO 4 buffer (pH 6.0–8.0) with 2 mm guaiacol as substrate. The standard deviation of each point is shown by error bars and was determined by three independent experiments.
Figure 3UV–visible absorption spectra of wild‐type and mutant proteins were measured at room temperature in 10 mm sodium phosphate buffer, pH 6.0. The protein concentration was 3 mg·mL−1. (A) WT (black), M460L (red), M460F (green) and M460A (blue); (B) WT (black), M460H (red) and M460Q (green).
The relative absorption intensity for wild‐type and mutant laccases
|
| LacTT | M460A | M460F | M460L | M460H | M460Q |
|---|---|---|---|---|---|---|
| 608 | 100% | 51% | 57% | 10% | 148% | 122% |
| 330 | 100% | 90% | 188% | 87% | 211% | 59% |
Figure 4(A–D) The structural geometry of T1 Cu site for laccases WT (A), M460A (B), M460F (C) and M460L (D). The blue line denotes the distance between the T1 Cu atom and the side chain of the axial residue. (E) M460H; (F) M460Q. The blue lines indicate the distance between the T1 Cu atom and the residue at the axial position as well as the distance between the ligand His397 of T1 Cu and the axial residue. The blue ball represents the T1 Cu atom.
Kinetic parameters of the wild‐type and mutants expressed in Escherichia coli. The catalytic efficiency of the enzyme is defined by k cat/K m. The values are means ± standard deviation
| Protein |
|
|
|
|---|---|---|---|
| TT | 378.49 ± 18.19 | 5.98 ± 0.32 | 15.85 ± 1.63 |
| M460A | 271.84 ± 13.21 | 3.74 ± 0.11 | 13.78 ± 0.37 |
| M460F | 132.37 ± 5.06 | 2.07 ± 0.06 | 15.63 ± 1.03 |
| M460L | 72.40 ± 13.31 | 0.26 ± 0.01 | 3.69 ± 0.74 |
| M460H | 88.74 ± 7.39 | 3.35 × 10−3 ± 2.09 × 10−4 | 3.81 × 10−2 ± 5.27 × 10−3 |
| M460Q | 436.06 ± 48.28 | 3.18 ± 0.20 | 7.39 ± 0.97 |
Redox potentials of wild‐type and mutant proteins
| Protein |
|
|---|---|
| WT | 357 |
| M460A | 409 |
| M460F | 416 |
| M460H | 371 |
| M460Q | 258 |