| Literature DB >> 30951557 |
Hyun-Lim Yang1, Jong Jin Kim2, Jong Ho Kim2, Yong Koo Kang2, Dong Ho Park2, Han Sang Park2, Hong Kyun Kim2, Min-Soo Kim1.
Abstract
Age-related macular degeneration (AMD) is the main cause of irreversible blindness among the elderly and require early diagnosis to prevent vision loss, and careful treatment is essential. Optical coherence tomography (OCT), the most commonly used imaging method in the retinal area for the diagnosis of AMD, is usually interpreted by a clinician, and OCT can help diagnose disease on the basis of the relevant diagnostic criteria, but these judgments can be somewhat subjective. We propose an algorithm for the detection of AMD based on a weakly supervised convolutional neural network (CNN) model to support computer-aided diagnosis (CAD) system. Our main contributions are the following three things. (1) We propose a concise CNN model for OCT images, which outperforms the existing large CNN models using VGG16 and GoogLeNet architectures. (2) We propose an algorithm called Expressive Gradients (EG) that extends the existing Integrated Gradients (IG) algorithm so as to exploit not only the input-level attribution map, but also the high-level attribution maps. Due to enriched gradients, EG can highlight suspicious regions for diagnosis of AMD better than the guided-backpropagation method and IG. (3) Our method provides two visualization options: overlay and top-k bounding boxes, which would be useful for CAD. Through experimental evaluation using 10,100 clinical OCT images from AMD patients, we demonstrate that our EG algorithm outperforms the IG algorithm in terms of localization accuracy and also outperforms the existing object detection methods in terms of class accuracy.Entities:
Mesh:
Year: 2019 PMID: 30951557 PMCID: PMC6450633 DOI: 10.1371/journal.pone.0215076
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1The architecture of our CNN model for AMD prediction on OCT images.
Performance evaluation of AMD prediction models for OCT images (STD = standard deviation).
| Method | Performance on their data | Performance on our data | ||||
|---|---|---|---|---|---|---|
| # of classes to predict | # of images | Reported accuracy | Test accuracy | Validation accuracy | 5-fold CV STD | |
| VGG16 [ | 2 (Normal, AMD) | 2.6M | 93.45% | 71.81% | 80.70% | 0.0154 |
| RF | 5 (Normal, Early AMD, Intermediate AMD, Advanced AMD GA, Advanced AMD CNV | 3,265 | 80.4% | - | - | - |
| RF with GFET | 3 (Normal, Dry AMD, Wet AMD) | 420 | 88.7% | 49.25% | 57.92% | 0.0089 |
| SVM with GFET | 3 (Normal, Dry AMD, Wet AMD) | 420 | 94.4% | 51.50% | 62.28% | 0.0147 |
| NN with GFET | 3 (Normal, Dry AMD, Wet AMD) | 420 | 78.1% | 52.50% | 51.81% | 0.0902 |
| GoogLeNet [ | 3 (Normal, Dry AMD, DME | 3,231 | 94% | 80.18% | 82.61% | 0.0182 |
| 4 (Normal, Dry AMD, Wet AMD with observation only, Wet AMD with anti-VEGF injection required) | 9,575 (training), 525 (testing) | - | 0.0035 | |||
‡RF: Random Forest,
§BoW: Bag of visual Words,
¶GFET: Gabor Filtering Energy Transform,
#DME: Diabetic Macular Edema.
Fig 2Operations of Integrated Gradients and Expressive Gradients.
Fig 3Variation of τ in wet AMD case.
Quantitative localization analysis (STD = standard deviation).
| Method | Mean of | STD of | Mean of | STD of |
|---|---|---|---|---|
| Guided-backpropagation | 0.076262 | 0.133901 | 0.071629 | 0.129572 |
| Integrated Gradients (IG) | 0.423445 | 0.307058 | 0.283803 | 0.240317 |
| 0.375928 | 0.293104 |
Fig 4Qualitative analysis for the wet AMD (with anti-VEGF injection required) case.
Fig 5Qualitative analysis for the Dry AMD case.
Comparison of class-level accuracy with object detection methods (STD = standard deviation).
| Method | Class-level accuracy | 5-fold CV STD | # of failures with no class |
|---|---|---|---|
| SSD | 33.98% | 0.1351 | 23 images |
| Faster R-CNN with ResNet50 | 68.96% | 0.0923 | 9 images |
| 0.0104 | - |
Fig 6Misclassified images of the object detection methods.