Literature DB >> 30949418

Cholinium-based Good's buffers ionic liquids as remarkable stabilizers and recyclable preservation media for recombinant small RNAs.

Augusto Q Pedro1, Patrícia Pereira2,3, Maria J Quental1, André P Carvalho1, Sérgio M Santos1, João A Queiroz2, Fani Sousa2, Mara G Freire1.   

Abstract

RNA is a biopolymer of high relevance in the biopharmaceuticals field and in fundamental and applied research; however, the preservation of the RNA stability is still a remarkable challenge. Herein, we demonstrate the enhanced potential of aqueous solutions of self-buffering cholinium-based Good's buffers ionic liquids (GB-ILs), at 20 and 50 % (w/w), as alternative preservation media of recombinant small RNAs. The thermal stability of RNA is highly enhanced by GB-ILs, with an increase of 14 °C in the biopolymer melting temperature - the highest increase observed up to date with ILs. Most GB-ILs investigated improve the stability of RNA at least up to 30-days, both at 25 °C and at 4 °C, without requiring the typical samples freezing. Molecular dynamics simulations were applied to better understand the molecular-level mechanisms responsible for the observed RNA improved stability. The number of IL cations surrounding the RNA chain is similar, yet with differences found for the IL anions, which are responsible for the overall charge of the biopolymer first solvation sphere. No cytotoxicity of the studied solutions containing RNA and ILs at 20 % (w/w) was observed onto two distinct human cell lines, reinforcing their potential to act as preservation media when foreseeing biopharmaceutical applications. Finally, RNA was successfully recovered from the ILs aqueous solutions, without changes in its structural integrity, and the ILs successfully recycled and reused.

Entities:  

Keywords:  Good’s Buffers; Ionic liquids; Nucleic acids; Recombinant RNA; Recyclable media; Stability

Year:  2018        PMID: 30949418      PMCID: PMC6443033          DOI: 10.1021/acssuschemeng.8b03900

Source DB:  PubMed          Journal:  ACS Sustain Chem Eng        ISSN: 2168-0485            Impact factor:   8.198


  33 in total

1.  Solubilization in formamide protects RNA from degradation.

Authors:  P Chomczynski
Journal:  Nucleic Acids Res       Date:  1992-07-25       Impact factor: 16.971

2.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

3.  DNA and RNA in anhydrous media: duplex, triplex, and G-quadruplex secondary structures in a deep eutectic solvent.

Authors:  Irena Mamajanov; Aaron E Engelhart; Heather D Bean; Nicholas V Hud
Journal:  Angew Chem Int Ed Engl       Date:  2010-08-23       Impact factor: 15.336

4.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

5.  Long-term structural and chemical stability of DNA in hydrated ionic liquids.

Authors:  Ranganathan Vijayaraghavan; Aleksey Izgorodin; Venkatraman Ganesh; Mahadevan Surianarayanan; Douglas R MacFarlane
Journal:  Angew Chem Int Ed Engl       Date:  2010-02-22       Impact factor: 15.336

Review 6.  Large scale expression and purification of recombinant RNA in Escherichia coli.

Authors:  Luc Ponchon; Frédéric Dardel
Journal:  Methods       Date:  2011-02-12       Impact factor: 3.608

7.  The effects of polyols on the thermal stability of calf thymus DNA.

Authors:  P Del Vecchio; D Esposito; L Ricchi; G Barone
Journal:  Int J Biol Macromol       Date:  1999-05       Impact factor: 6.953

8.  Evaluating the cytotoxicity of ionic liquids using human cell line HeLa.

Authors:  P Stepnowski; A C Składanowski; A Ludwiczak; E Laczyńska
Journal:  Hum Exp Toxicol       Date:  2004-11       Impact factor: 2.903

9.  Controlling the aqueous miscibility of ionic liquids: aqueous biphasic systems of water-miscible ionic liquids and water-structuring salts for recycle, metathesis, and separations.

Authors:  Keith E Gutowski; Grant A Broker; Heather D Willauer; Jonathan G Huddleston; Richard P Swatloski; John D Holbrey; Robin D Rogers
Journal:  J Am Chem Soc       Date:  2003-06-04       Impact factor: 15.419

10.  Urea destabilizes RNA by forming stacking interactions and multiple hydrogen bonds with nucleic acid bases.

Authors:  U Deva Priyakumar; Changbong Hyeon; D Thirumalai; Alexander D Mackerell
Journal:  J Am Chem Soc       Date:  2009-12-16       Impact factor: 15.419

View more
  2 in total

1.  Magnetic Ionic Liquids as Solvents for RNA Extraction and Preservation.

Authors:  Chenghui Zhu; Marcelino Varona; Jared L Anderson
Journal:  ACS Omega       Date:  2020-05-05

2.  Insights on the DNA Stability in Aqueous Solutions of Ionic Liquids.

Authors:  Teresa B V Dinis; Fani Sousa; Mara G Freire
Journal:  Front Bioeng Biotechnol       Date:  2020-10-14
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.