Literature DB >> 30945667

Integrative taxonomy of commercially important deep water penaeoid shrimps from India.

P Purushothaman1, Rekha Devi Chakraborty, G Kuberan, G Maheswarudu.   

Abstract

The deep water penaeoid shrimp is an important commercial crustacean resource along the Indian coast. The molecular and morphological information of this group from the Indian coast is scarcely known. In this study, we investigated the identification and phylogenetic relationships of the deep water penaeoid shrimps using three mitochondrial (cytochrome oxidase subunit I (COI), cytochrome b, 16S rRNA) genes, which were compared with 54 morphological characters and further used to evaluate character evolution. Our study revealed remarkable molecular divergence (3.3-33.0%) in nine species from three genera of Solenoceridae, four species from three genera of Penaeidae and one species from Aristeidae using COI. Phylogenetic analysis using maximum likelihood and Bayesian approaches revealed that all species from these families are monophyletic. The present analysis revealed the existence of subgroups in the genus Solenocera suggesting the slow reduction of postrostral carina which corresponds to the increase in distributional depth during the evolutionary process which further indicates the origin of the genus in the continental shelf and extending up to the continental slope. In addition, we generated the DNA barcode database involving these species which can help further to investigate the detailed evolution and biogeography of these valuable crustacean resources.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 30945667

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  10 in total

1.  Automatic annotation of organellar genomes with DOGMA.

Authors:  Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

2.  Chloroplast phylogeography of Dipentodon (Dipentodontaceae) in southwest China and northern Vietnam.

Authors:  Qing-Jun Yuan; Zhi-Yong Zhang; Hua Peng; Song Ge
Journal:  Mol Ecol       Date:  2008-01-14       Impact factor: 6.185

3.  Plastid phylogenomics and adaptive evolution of Gaultheria series Trichophyllae (Ericaceae), a clade from sky islands of the Himalaya-Hengduan Mountains.

Authors:  Ming-Ying Zhang; Peter W Fritsch; Peng-Fei Ma; Hong Wang; Lu Lu; De-Zhu Li
Journal:  Mol Phylogenet Evol       Date:  2017-02-16       Impact factor: 4.286

4.  Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia.

Authors:  Guo-Xiong Hu; Atsuko Takano; Bryan T Drew; En-De Liu; Douglas E Soltis; Pamela S Soltis; Hua Peng; Chun-Lei Xiang
Journal:  Ann Bot       Date:  2018-09-24       Impact factor: 4.357

5.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

6.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

7.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

8.  Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes.

Authors:  Matthew Parks; Richard Cronn; Aaron Liston
Journal:  BMC Biol       Date:  2009-12-02       Impact factor: 7.431

9.  OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets.

Authors:  Marc Lohse; Oliver Drechsel; Sabine Kahlau; Ralph Bock
Journal:  Nucleic Acids Res       Date:  2013-04-22       Impact factor: 16.971

10.  Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution.

Authors:  Chao-Nan Fu; Hong-Tao Li; Richard Milne; Ting Zhang; Peng-Fei Ma; Jing Yang; De-Zhu Li; Lian-Ming Gao
Journal:  BMC Genomics       Date:  2017-12-08       Impact factor: 3.969

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.