Literature DB >> 30944843

Recurrent residual U-Net for medical image segmentation.

Md Zahangir Alom1, Chris Yakopcic1, Mahmudul Hasan2, Tarek M Taha1, Vijayan K Asari1.   

Abstract

Deep learning (DL)-based semantic segmentation methods have been providing state-of-the-art performance in the past few years. More specifically, these techniques have been successfully applied in medical image classification, segmentation, and detection tasks. One DL technique, U-Net, has become one of the most popular for these applications. We propose a recurrent U-Net model and a recurrent residual U-Net model, which are named RU-Net and R2U-Net, respectively. The proposed models utilize the power of U-Net, residual networks, and recurrent convolutional neural networks. There are several advantages to using these proposed architectures for segmentation tasks. First, a residual unit helps when training deep architectures. Second, feature accumulation with recurrent residual convolutional layers ensures better feature representation for segmentation tasks. Third, it allows us to design better U-Net architectures with the same number of network parameters with better performance for medical image segmentation. The proposed models are tested on three benchmark datasets, such as blood vessel segmentation in retinal images, skin cancer segmentation, and lung lesion segmentation. The experimental results show superior performance on segmentation tasks compared to equivalent models, including a variant of a fully connected convolutional neural network called SegNet, U-Net, and residual U-Net.

Entities:  

Keywords:  U-Net; convolutional neural networks; medical imaging; recurrent U-Net; recurrent residual U-Net; residual U-Net; semantic segmentation

Year:  2019        PMID: 30944843      PMCID: PMC6435980          DOI: 10.1117/1.JMI.6.1.014006

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  24 in total

1.  Locating blood vessels in retinal images by piecewise threshold probing of a matched filter response.

Authors:  A Hoover; V Kouznetsova; M Goldbaum
Journal:  IEEE Trans Med Imaging       Date:  2000-03       Impact factor: 10.048

2.  Ridge-based vessel segmentation in color images of the retina.

Authors:  Joes Staal; Michael D Abràmoff; Meindert Niemeijer; Max A Viergever; Bram van Ginneken
Journal:  IEEE Trans Med Imaging       Date:  2004-04       Impact factor: 10.048

3.  A new supervised method for blood vessel segmentation in retinal images by using gray-level and moment invariants-based features.

Authors:  Diego Marin; Arturo Aquino; Manuel Emilio Gegundez-Arias; José Manuel Bravo
Journal:  IEEE Trans Med Imaging       Date:  2010-08-09       Impact factor: 10.048

4.  Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification.

Authors:  João V B Soares; Jorge J G Leandro; Roberto M Cesar Júnior; Herbert F Jelinek; Michael J Cree
Journal:  IEEE Trans Med Imaging       Date:  2006-09       Impact factor: 10.048

5.  An ensemble classification-based approach applied to retinal blood vessel segmentation.

Authors:  Muhammad Moazam Fraz; Paolo Remagnino; Andreas Hoppe; Bunyarit Uyyanonvara; Alicja R Rudnicka; Christopher G Owen; Sarah A Barman
Journal:  IEEE Trans Biomed Eng       Date:  2012-06-22       Impact factor: 4.538

6.  Blood Vessel Segmentation of Fundus Images by Major Vessel Extraction and Subimage Classification.

Authors:  Sohini Roychowdhury; Dara D Koozekanani; Keshab K Parhi
Journal:  IEEE J Biomed Health Inform       Date:  2015-05       Impact factor: 5.772

7.  Trainable COSFIRE filters for vessel delineation with application to retinal images.

Authors:  George Azzopardi; Nicola Strisciuglio; Mario Vento; Nicolai Petkov
Journal:  Med Image Anal       Date:  2014-09-03       Impact factor: 8.545

Review 8.  Blood vessel segmentation methodologies in retinal images--a survey.

Authors:  M M Fraz; P Remagnino; A Hoppe; B Uyyanonvara; A R Rudnicka; C G Owen; S A Barman
Journal:  Comput Methods Programs Biomed       Date:  2012-04-22       Impact factor: 5.428

Review 9.  Delineation of blood vessels in pediatric retinal images using decision trees-based ensemble classification.

Authors:  Muhammad Moazam Fraz; Alicja R Rudnicka; Christopher G Owen; Sarah A Barman
Journal:  Int J Comput Assist Radiol Surg       Date:  2013-12-24       Impact factor: 2.924

10.  The virtual skeleton database: an open access repository for biomedical research and collaboration.

Authors:  Michael Kistler; Serena Bonaretti; Marcel Pfahrer; Roman Niklaus; Philippe Büchler
Journal:  J Med Internet Res       Date:  2013-11-12       Impact factor: 5.428

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  44 in total

1.  Two-stage multitask U-Net construction for pulmonary nodule segmentation and malignancy risk prediction.

Authors:  Yangfan Ni; Zhe Xie; Dezhong Zheng; Yuanyuan Yang; Weidong Wang
Journal:  Quant Imaging Med Surg       Date:  2022-01

2.  Kidney Tumor Segmentation Based on FR2PAttU-Net Model.

Authors:  Peng Sun; Zengnan Mo; Fangrong Hu; Fang Liu; Taiping Mo; Yewei Zhang; Zhencheng Chen
Journal:  Front Oncol       Date:  2022-03-17       Impact factor: 6.244

3.  Color-invariant skin lesion semantic segmentation based on modified U-Net deep convolutional neural network.

Authors:  Rania Ramadan; Saleh Aly; Mahmoud Abdel-Atty
Journal:  Health Inf Sci Syst       Date:  2022-08-14

4.  EMDS-6: Environmental Microorganism Image Dataset Sixth Version for Image Denoising, Segmentation, Feature Extraction, Classification, and Detection Method Evaluation.

Authors:  Peng Zhao; Chen Li; Md Mamunur Rahaman; Hao Xu; Pingli Ma; Hechen Yang; Hongzan Sun; Tao Jiang; Ning Xu; Marcin Grzegorzek
Journal:  Front Microbiol       Date:  2022-04-25       Impact factor: 6.064

5.  Synthesis of magnetic resonance images from computed tomography data using convolutional neural network with contextual loss function.

Authors:  Zhaotong Li; Xinrui Huang; Zeru Zhang; Liangyou Liu; Fei Wang; Sha Li; Song Gao; Jun Xia
Journal:  Quant Imaging Med Surg       Date:  2022-06

6.  Fully automatic segmentation of glottis and vocal folds in endoscopic laryngeal high-speed videos using a deep Convolutional LSTM Network.

Authors:  Mona Kirstin Fehling; Fabian Grosch; Maria Elke Schuster; Bernhard Schick; Jörg Lohscheller
Journal:  PLoS One       Date:  2020-02-10       Impact factor: 3.240

7.  Automated identification of pulmonary arteries and veins depicted in non-contrast chest CT scans.

Authors:  Jiantao Pu; Joseph K Leader; Jacob Sechrist; Cameron A Beeche; Jatin P Singh; Iclal K Ocak; Michael G Risbano
Journal:  Med Image Anal       Date:  2022-01-12       Impact factor: 8.545

8.  Traction force microscopy by deep learning.

Authors:  Yu-Li Wang; Yun-Chu Lin
Journal:  Biophys J       Date:  2021-06-30       Impact factor: 3.699

9.  Computer-Aided Diagnosis Evaluation of the Correlation Between Magnetic Resonance Imaging With Molecular Subtypes in Breast Cancer.

Authors:  Wei Meng; Yunfeng Sun; Haibin Qian; Xiaodan Chen; Qiujie Yu; Nanding Abiyasi; Shaolei Yan; Haiyong Peng; Hongxia Zhang; Xiushi Zhang
Journal:  Front Oncol       Date:  2021-06-23       Impact factor: 6.244

10.  A pilot study: Quantify lung volume and emphysema extent directly from two-dimensional scout images.

Authors:  Jiantao Pu; Jacob Sechrist; Xin Meng; Joseph K Leader; Frank C Sciurba
Journal:  Med Phys       Date:  2021-07-06       Impact factor: 4.506

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