| Literature DB >> 30944665 |
Wanning Xia1, Nanxing Chen1, Wenjia Peng1, Xianjie Jia1, Ying Yu2, Xuesen Wu1, Huaiquan Gao1.
Abstract
BACKGROUND: Genome-wide association study (GWAS) provides an unprecedented opportunity to reveal substantial genetic contribution to type 2 diabetes mellitus (T2DM) and glycemic identification of allelic heterogeneity and population-specific genetic variants, yet it also faces difficulty due to the vast amount of potential confounding factors and limited availability of clinical data. To identify responsible susceptibility loci and genomic polymorphism for T2DM and glycemic traits, we have systematically investigated a genome-wide association study related to T2DM. Although GWAS has captured many common genetic variations, which are related to T2DM, each risk allele (RA) of single-nucleotide polymorphisms (SNPs) at these loci is not conclusive. Therefore, it is common to present a combination of several SNPs to infer T2DM risk, yet it is still insufficient to be deterministic. To streamline the identification of a deterministic genetic variation in T2DM, we developed this meta-analysis as a showcase to comprehensively identify the association between cumulative RAs and T2DM risk by combining different studies in reported literature and databases. After all, we identified that PGC-1α rs8192678 polymorphism can be considered as a potentially deterministic biomarker in T2DM risk. Previous studies have potentially linked PGC-1α rs8192678 polymorphism to type 2 diabetes mellitus (T2DM) risk, but the results remain inconsistent in different populations and are not conclusive. We developed a new meta-analysis approach to systematically identify the association between PGC-1α rs8192678 polymorphism and T2DM, and we have comprehensively assessed different ethnic groups to validate our findings.Entities:
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Substances:
Year: 2019 PMID: 30944665 PMCID: PMC6421808 DOI: 10.1155/2019/2970401
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Figure 1The flow chart of literature search and selection.
Characteristics of the included studies about the association between PGC-1αrs8192678 polymorphism and T2DM.
| Author | Year | Ethnicity | T2DM | Control | Matching variables | Chi-square values of HWE |
| ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GG | GA | AA | Total | GG | GA | AA | Total | ||||||
| Chen et al. [ | 2004 | Chinese | 155 | 255 | 84 | 494 | 185 | 264 | 106 | 555 | Age, gender | 0.466 | 0.495 |
| De-yao et al. [ | 2014 | Chinese | 165 | 175 | 90 | 430 | 190 | 181 | 60 | 431 | Age, gender | 2.492 | 0.115 |
| Hui et al. [ | 2009 | Chinese | 71 | 28 | 41 | 140 | 47 | 30 | 11 | 88 | Gender, BMI | 1.276 | 0.259 |
| Kim et al. [ | 2005 | Korean | 251 | 355 | 152 | 762 | 88 | 163 | 51 | 303 | Gender | 2.779 | 0.096 |
| Lu et al. [ | 2006 | Chinese | 44 | 55 | 21 | 120 | 54 | 41 | 11 | 106 | — | 0.581 | 0.446 |
| Sun et al. [ | 2006 | Chinese | 122 | 190 | 78 | 390 | 181 | 256 | 88 | 525 | Age, gender, BMI | 0.025 | 0.876 |
| Weng et al. [ | 2010 | Chinese | 91 | 129 | 56 | 276 | 340 | 502 | 207 | 1049 | Age, gender, BMI | 0.78 | 0.377 |
| Zhang et al. [ | 2007 | Chinese | 97 | 121 | 45 | 263 | 144 | 111 | 27 | 282 | Age, BMI | 0.679 | 0.41 |
| Zhu et al. [ | 2017 | Chinese | 138 | 251 | 108 | 502 | 250 | 382 | 150 | 784 | Age, gender | 0.036 | 0.85 |
| Zhu et al. [ | 2009 | Chinese | 181 | 303 | 111 | 595 | 143 | 240 | 112 | 495 | Gender, BMI | 0.347 | 0.556 |
| Ek et al. (a) [ | 2001 | Caucasian | 186 | 200 | 68 | 454 | 97 | 80 | 21 | 198 | — | 0.541 | 0.462 |
| Ek et al. (b) [ | 2001 | Caucasian | 76 | 97 | 28 | 201 | 146 | 116 | 31 | 293 | — | 1.2 | 0.273 |
| Fanelli et al. [ | 2005 | Caucasian | 51 | 56 | 18 | 125 | 86 | 96 | 41 | 223 | Gender | 2.431 | 0.126 |
| Jemaa et al. [ | 2015 | Caucasian | 166 | 231 | 90 | 478 | 176 | 170 | 56 | 402 | Age, gender | 2.055 | 0.152 |
| Kruzliak et al. [ | 2015 | Caucasian | 80 | 334 | 467 | 881 | 40 | 147 | 161 | 348 | Age, gender | 0.529 | 0.467 |
| Kunej et al. [ | 2004 | Caucasian | 141 | 129 | 35 | 305 | 114 | 111 | 15 | 240 | Age, gender, BMI | 3.156 | 0.076 |
| Lacquemant et al. [ | 2002 | Caucasian | 129 | 137 | 44 | 310 | 163 | 159 | 47 | 369 | — | 0.705 | 0.401 |
| Shokouhi et al. [ | 2015 | Caucasian | 127 | 43 | 3 | 173 | 159 | 13 | 1 | 173 | Age | 1.531 | 0.216 |
| Bhat et al. (a) [ | 2007 | Indian | 68 | 103 | 28 | 199 | 112 | 80 | 21 | 213 | BMI | 1.401 | 0.237 |
| Bhat et al. (b) [ | 2007 | Indian | 69 | 70 | 13 | 152 | 143 | 96 | 19 | 258 | BMI | 0.269 | 0.604 |
| Sharma et al. [ | 2018 | Indian | 220 | 254 | 80 | 554 | 258 | 249 | 64 | 571 | Age, sex | 0.112 | 0.737 |
| Cheema et al. (a) [ | 2015 | African | 92 | 4 | 14 | 110 | 102 | 14 | 0 | 116 | Gender, BMI | 0.478 | 0.489 |
| Cheema et al. (b) [ | 2015 | African | 103 | 19 | 2 | 124 | 104 | 18 | 0 | 122 | Gender | 0.774 | 0.379 |
HWE: Hardy-Weinberg equilibrium; P value: P value of HWE.
Results of quality assessment by NOS.
| Study ID | Year | Selection | Comparability | Exposure | Score | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Adequate definition of cases | Representativeness of cases | Selection of controls | Definition of controls | Control for important factors | Ascertainment of exposure | Same method of ascertainment for cases and controls | Non-response rate | |||
| Bhat et al. (a) | 2007 | ☆ | ☆ | — | ☆ | ☆ | ☆ | ☆ | ☆ | 7 |
| Bhat et al. (b) | 2007 | ☆ | ☆ | — | ☆ | ☆ | ☆ | ☆ | ☆ | 7 |
| Cheema et al. (a) | 2015 | ☆ | ☆ | — | ☆ | ☆ | ☆ | ☆ | ☆ | 7 |
| Cheema et al. (b) | 2015 | ☆ | ☆ | — | ☆ | — | ☆ | ☆ | ☆ | 6 |
| Chen et al. | 2004 | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 8 |
| De-yao et al. | 2014 | — | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 7 |
| Ek et al. (a) | 2001 | ☆ | — | ☆ | ☆ | — | ☆ | ☆ | ☆ | 6 |
| Ek et al. (b) | 2001 | ☆ | — | ☆ | ☆ | — | ☆ | ☆ | ☆ | 6 |
| Fanelli et al. | 2005 | ☆ | ☆ | — | ☆ | — | — | ☆ | — | 4 |
| Hui et al. | 2009 | — | ☆ | — | ☆ | ☆ | ☆ | ☆ | ☆ | 6 |
| Jemaa et al. | 2015 | — | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 7 |
| Kim et al. | 2005 | ☆ | ☆ | — | ☆ | — | ☆ | ☆ | ☆ | 6 |
| Kruzliak et al. | 2015 | — | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 7 |
| Kunej et al. | 2004 | — | ☆ | — | — | ☆☆ | — | ☆ | ☆ | 5 |
| Lacquemant et al. | 2002 | — | — | ☆ | ☆ | — | ☆ | ☆ | ☆ | 5 |
| Lu et al. | 2006 | — | ☆ | ☆ | ☆ | — | ☆ | ☆ | — | 5 |
| Sharma et al. | 2018 | ☆ | — | ☆ | ☆ | ☆ | ☆ | ☆ | — | 6 |
| Shokouhi et al. | 2015 | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 8 |
| Sun et al. | 2006 | — | ☆ | ☆ | ☆ | ☆☆ | ☆ | ☆ | ☆ | 8 |
| Weng et al. | 2010 | — | ☆ | — | ☆ | ☆☆ | ☆ | ☆ | ☆ | 7 |
| Zhang et al. | 2007 | — | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 7 |
| Zhu et al. | 2017 | — | ☆ | — | ☆ | ☆ | ☆ | ☆ | ☆ | 6 |
| Zhu et al. | 2009 | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | ☆ | 8 |
Note: a study can be awarded a maximum of one star for each numbered item within the Selection and Exposure categories. A maximum of two stars can be given for Comparability. A maximum of 2 stars can be allotted in this category, one for age, the other for other controlled factors (gender, BMI, WHR, and so on).
Summary of meta-analysis of association between PGC-1αrs8192678 polymorphism and T2DM.
| Genetic model | Pooled OR (95% CI) |
|
| Study number | Cases | Controls |
|
|
|---|---|---|---|---|---|---|---|---|
| Allelic genetic model | 1.24 (1.13-1.35) | 4.76 | <0.05 | 20 | 8038 | 8144 | 66.4 | <0.05 |
| East Asian subgroup | 1.15 (1.02-1.29) | 2.34 | <0.05 | 10 | 3972 | 4618 | 67.9 | <0.05 |
| Caucasian subgroup | 1.28 (1.09-1.49) | 3.07 | <0.05 | 7 | 2927 | 2246 | 65.4 | <0.05 |
| Indian subgroup | 1.35 (1.12-1.62) | 3.13 | <0.05 | 2 | 905 | 1042 | 39.8 | 0.19 |
| African subgroup | 1.84 (0.90-3.74) | 1.68 | 0.09 | 1 | 234 | 238 | 58.1 | 0.12 |
| Dominant genetic model | 1.27 (1.14-1.42) | 4.27 | <0.05 | 20 | 8038 | 8144 | 57.5 | <0.05 |
| East Asian subgroup | 1.15 (1.00-1.32) | 1.91 | 0.06 | 10 | 3972 | 4618 | 51.1 | <0.05 |
| Caucasian subgroup | 1.37 (1.10-1.71) | 2.84 | <0.05 | 7 | 2927 | 2246 | 64.8 | <0.05 |
| Indian subgroup | 1.54 (1.12-2.11) | 2.68 | <0.05 | 2 | 905 | 1042 | 61.2 | 0.08 |
| African subgroup | 1.28 (0.77-2.13) | 0.97 | 0.33 | 1 | 234 | 238 | 0 | 0.71 |
| Recessive genetic model | 1.24 (1.14-1.36) | 4.95 | <0.05 | 20 | 8038 | 8144 | 45.5 | <0.05 |
| East Asian subgroup | 1.17 (1.04-1.31) | 2.63 | <0.05 | 10 | 3972 | 4618 | 64.9 | <0.05 |
| Caucasian subgroup | 1.31 (1.12-1.53) | 3.45 | <0.05 | 7 | 2927 | 2246 | 0 | 0.52 |
| Indian subgroup | 1.35 (1.02-1.78) | 2.08 | <0.05 | 2 | 905 | 1042 | 0 | 0.88 |
| African subgroup | 18.85 (2.55-139.61) | 2.87 | <0.05 | 1 | 234 | 238 | 0 | 0.34 |
| Homozygous genetic model | 1.40 (1.20-1.64) | 4.34 | <0.05 | 20 | 8038 | 8144 | 50 | <0.05 |
| East Asian subgroup | 1.31 (1.04-1.64) | 2.3 | <0.05 | 10 | 3972 | 4618 | 64.8 | <0.05 |
| Caucasian subgroup | 1.47 (1.21-1.79) | 3.84 | <0.05 | 7 | 2927 | 2246 | 4.9 | 0.39 |
| Indian subgroup | 1.59 (1.18-2.14) | 3.06 | <0.05 | 2 | 905 | 1042 | 0 | 0.54 |
| African subgroup | 13.63 (1.71-108.58) | 2.47 | <0.05 | 1 | 234 | 238 | 0 | 0.36 |
| Heterozygous genetic model | 1.20 (1.06-1.35) | 2.87 | 0.004 | 20 | 8038 | 8144 | 59.5 | <0.05 |
| East Asian subgroup | 1.08 (0.94-1.24) | 1.07 | 0.29 | 10 | 3972 | 4618 | 45.4 | 0.06 |
| Caucasian subgroup | 1.32 (1.05-1.66) | 2.37 | 0.02 | 7 | 2927 | 2246 | 63.9 | <0.05 |
| Indian subgroup | 1.52 (1.08-2.13) | 2.40 | 0.02 | 2 | 905 | 1042 | 62.9 | 0.07 |
| African subgroup | 0.63 (0.20-2.07) | 0.76 | 0.45 | 1 | 234 | 238 | 68.3 | 0.08 |
A, mutant type; genetic model: allelic (A vs. G), dominant (AG + AA vs. GG), recessive (AA vs. AG + GG), homozygous (AA vs. GG), and heterozygous (AG vs. GG).
Figure 2Forest plot of T2DM associated with PGC-1α rs8192678 polymorphism under recessive genetic model (AA vs. AG + GG).
Figure 3Funnel plot of T2DM associated with PGC-1α rs8192678 polymorphism under recessive genetic model (AA vs. AG + GG).
Figure 4Filled funnel plot of T2DM associated with PGC-1α rs8192678 polymorphism under recessive genetic model (AA vs. AG + GG).
Figure 5Sensitivity analysis under recessive genetic model (AA vs. AG + GG).