Literature DB >> 30940445

From polymer chemistry to structural biology: The development of SMA and related amphipathic polymers for membrane protein extraction and solubilisation.

Juan Francisco Bada Juarez1, Andrew J Harper2, Peter J Judge1, Stephen R Tonge2, Anthony Watts3.   

Abstract

Nanoparticles assembled with poly(styrene-maleic acid) copolymers, identified in the literature as Lipodisq, SMALPs or Native Nanodisc, are routinely used as membrane mimetics to stabilise protein structures in their native conformation. To date, transmembrane proteins of varying complexity (up to 8 beta strands or 48 alpha helices) and of a range of molecular weights (from 27 kDa up to 500 kDa) have been incorporated into this particle system for structural and functional studies. SMA and related amphipathic polymers have become versatile components of the biochemist's tool kit for the stabilisation, extraction and structural characterization of membrane proteins by techniques including cryo-EM and X-ray crystallography. Lipodisq formation does not require the use of conventional detergents and thus avoids their associated detrimental consequences. Here the development of this technology, from its fundamental concept and design to the diverse range of experimental methodologies to which it can now be applied, will be reviewed.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Amphipathic polymers; DIBMA; Discoidal lipid nanoparticles; Drug delivery; Hypercoiling amphipathic polymers; Lipid nanoparticles; Lipodisq; Membrane protein; Nanodiscs; Native nanodiscs; Polymer chemistry; Polymer labelling; SMA lipid nanoparticles; SMA poylmer; SMALP; Structural biology

Year:  2019        PMID: 30940445     DOI: 10.1016/j.chemphyslip.2019.03.008

Source DB:  PubMed          Journal:  Chem Phys Lipids        ISSN: 0009-3084            Impact factor:   3.329


  12 in total

1.  Detergent Alternatives: Membrane Protein Purification Using Synthetic Nanodisc Polymers.

Authors:  Valentina S Dimitrova; Saemee Song; Alexandra Karagiaridi; Anika Marand; Heather W Pinkett
Journal:  Methods Mol Biol       Date:  2022

2.  Measurement of Residual Dipolar Couplings Using Magnetically Aligned and Flipped Nanodiscs.

Authors:  Thirupathi Ravula; Ayyalusamy Ramamoorthy
Journal:  Langmuir       Date:  2021-12-29       Impact factor: 4.331

3.  Detergent-free extraction, reconstitution and characterization of membrane-anchored cytochrome-b5 in native lipids.

Authors:  Bankala Krishnarjuna; Thirupathi Ravula; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2020-05-28       Impact factor: 6.222

4.  New approach for membrane protein reconstitution into peptidiscs and basis for their adaptability to different proteins.

Authors:  Gabriella Angiulli; Harveer Singh Dhupar; Hiroshi Suzuki; Irvinder Singh Wason; Franck Duong Van Hoa; Thomas Walz
Journal:  Elife       Date:  2020-03-03       Impact factor: 8.140

Review 5.  The energetics of protein-lipid interactions as viewed by molecular simulations.

Authors:  Robin A Corey; Phillip J Stansfeld; Mark S P Sansom
Journal:  Biochem Soc Trans       Date:  2020-02-28       Impact factor: 4.919

Review 6.  Mechanisms of Formation, Structure, and Dynamics of Lipoprotein Discs Stabilized by Amphiphilic Copolymers: A Comprehensive Review.

Authors:  Philipp S Orekhov; Marine E Bozdaganyan; Natalia Voskoboynikova; Armen Y Mulkidjanian; Maria G Karlova; Anna Yudenko; Alina Remeeva; Yury L Ryzhykau; Ivan Gushchin; Valentin I Gordeliy; Olga S Sokolova; Heinz-Jürgen Steinhoff; Mikhail P Kirpichnikov; Konstantin V Shaitan
Journal:  Nanomaterials (Basel)       Date:  2022-01-23       Impact factor: 5.076

Review 7.  Biophysical Characterization of Membrane Proteins Embedded in Nanodiscs Using Fluorescence Correlation Spectroscopy.

Authors:  Matthew J Laurence; Timothy S Carpenter; Ted A Laurence; Matthew A Coleman; Megan Shelby; Chao Liu
Journal:  Membranes (Basel)       Date:  2022-03-31

Review 8.  Assessing the Role of Lipids in the Molecular Mechanism of Membrane Proteins.

Authors:  Léni Jodaitis; Thomas van Oene; Chloé Martens
Journal:  Int J Mol Sci       Date:  2021-07-06       Impact factor: 5.923

9.  Solid-State NMR Study to Probe the Effects of Divalent Metal Ions (Ca2+ and Mg2+) on the Magnetic Alignment of Polymer-Based Lipid Nanodiscs.

Authors:  Thirupathi Ravula; Xiaofeng Dai; Ayyalusamy Ramamoorthy
Journal:  Langmuir       Date:  2021-06-15       Impact factor: 4.331

Review 10.  Lipid nanoparticle technologies for the study of G protein-coupled receptors in lipid environments.

Authors:  Steven Lavington; Anthony Watts
Journal:  Biophys Rev       Date:  2020-11-19
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