Literature DB >> 30929625

Optical control, selection and analysis of population dynamics in ultrafast protein X-ray crystallography.

Christopher D M Hutchison1, Jasper J van Thor1.   

Abstract

Ultrafast pump-probe X-ray crystallography has now been established at X-ray free electron lasers that operate at hard X-ray energies. We discuss the performance and development of current applications in terms of the available data quality and sensitivity to detect and analyse structural dynamics. A discussion of technical capabilities expected at future high repetition rate applications as well as future non-collinear multi-pulse schemes focuses on the possibility to advance the technique to the practical application of the X-ray crystallographic equivalent of an impulse time-domain Raman measurement of vibrational coherence. Furthermore, we present calculations of the magnitude of population differences and distributions prepared with ultrafast optical pumping of single crystals in the typical serial femtosecond crystallography geometry, which are developed for the general uniaxial and biaxial cases. The results present opportunities for polarization resolved anisotropic X-ray diffraction analysis of photochemical populations for the ultrafast time domain. This article is part of the theme issue 'Measurement of ultrafast electronic and structural dynamics with X-rays'.

Entities:  

Keywords:  TR-SFX; X-ray free electron laser; XFEL; nuclear coherence; optical control; time-resolved serial femtosecond crystallography

Year:  2019        PMID: 30929625      PMCID: PMC6452057          DOI: 10.1098/rsta.2017.0474

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  31 in total

1.  Real-time spectroscopy of transition states in bacteriorhodopsin during retinal isomerization.

Authors:  T Kobayashi; T Saito; H Ohtani
Journal:  Nature       Date:  2001-11-29       Impact factor: 49.962

2.  Time-resolved pump-probe experiments at the LCLS.

Authors:  James M Glownia; J Cryan; J Andreasson; A Belkacem; N Berrah; C I Blaga; C Bostedt; J Bozek; L F DiMauro; L Fang; J Frisch; O Gessner; M Gühr; J Hajdu; M P Hertlein; M Hoener; G Huang; O Kornilov; J P Marangos; A M March; B K McFarland; H Merdji; V S Petrovic; C Raman; D Ray; D A Reis; M Trigo; J L White; W White; R Wilcox; L Young; R N Coffee; P H Bucksbaum
Journal:  Opt Express       Date:  2010-08-16       Impact factor: 3.894

3.  Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.

Authors:  Hyotcherl Ihee; Sudarshan Rajagopal; Vukica Srajer; Reinhard Pahl; Spencer Anderson; Marius Schmidt; Friedrich Schotte; Philip A Anfinrud; Michael Wulff; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

4.  Laue crystallography for studying rapid reactions.

Authors:  Z Ren; K Moffat
Journal:  J Synchrotron Radiat       Date:  1994-10-01       Impact factor: 2.616

5.  Single-shot spectrometry for x-ray free-electron lasers.

Authors:  Makina Yabashi; Jerome B Hastings; Max S Zolotorev; Hidekazu Mimura; Hirokatsu Yumoto; Satoshi Matsuyama; Kazuto Yamauchi; Tetsuya Ishikawa
Journal:  Phys Rev Lett       Date:  2006-08-25       Impact factor: 9.161

6.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

Review 7.  Infrared protein crystallography.

Authors:  J Timothy Sage; Yunbin Zhang; John McGeehan; Raimond B G Ravelli; Martin Weik; Jasper J van Thor
Journal:  Biochim Biophys Acta       Date:  2011-03-02

8.  Photoisomerisation quantum yield and non-linear cross-sections with femtosecond excitation of the photoactive yellow protein.

Authors:  Craig N Lincoln; Ann E Fitzpatrick; Jasper J van Thor
Journal:  Phys Chem Chem Phys       Date:  2012-10-23       Impact factor: 3.676

9.  Determination of the pulse duration of an x-ray free electron laser using highly resolved single-shot spectra.

Authors:  Yuichi Inubushi; Kensuke Tono; Tadashi Togashi; Takahiro Sato; Takaki Hatsui; Takashi Kameshima; Kazuaki Togawa; Toru Hara; Takashi Tanaka; Hitoshi Tanaka; Tetsuya Ishikawa; Makina Yabashi
Journal:  Phys Rev Lett       Date:  2012-10-01       Impact factor: 9.161

10.  Conical intersection dynamics of the primary photoisomerization event in vision.

Authors:  Dario Polli; Piero Altoè; Oliver Weingart; Katelyn M Spillane; Cristian Manzoni; Daniele Brida; Gaia Tomasello; Giorgio Orlandi; Philipp Kukura; Richard A Mathies; Marco Garavelli; Giulio Cerullo
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

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