Literature DB >> 30928492

Accelerating structural life science by paramagnetic lanthanide probe methods.

Tomohide Saio1, Koichiro Ishimori2.   

Abstract

We describe the recent progress of structural analysis methods exploiting paramagnetic lanthanide ions. In NMR spectroscopy, the paramagnetic effects induced by the trivalent lanthanide ions provide long-range (~40 Å) distance and angular information that can be exploited in protein structure determination, ligand screening, structure-based resonance assignment, and in-cell observation. The paramagnetic lanthanide ions can also be utilized in EPR spectroscopy, providing nanometer-scale distance measurement. These applications of the paramagnetic lanthanide probe are becoming more widespread by the use of a variety of lanthanide binding tags. Here, we introduce the basics of paramagnetic effects, several examples of lanthanide tags, and recent applications of paramagnetic lanthanide ions in NMR and EPR spectroscopy. Collectively, we show how the paramagnetic lanthanide probe accelerates research in protein science and drug design, and consequently life science.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Conformational change; Electron spin resonance; Ligand screening; Long-range restraint; Nuclear magnetic resonance; Paramagnetic lanthanide ion; Paramagnetic relaxation enhancement; Protein structure; Protein-ligand complex; Pseudocontact shift; Residual dipolar coupling

Year:  2019        PMID: 30928492     DOI: 10.1016/j.bbagen.2019.03.018

Source DB:  PubMed          Journal:  Biochim Biophys Acta Gen Subj        ISSN: 0304-4165            Impact factor:   3.770


  6 in total

1.  Biophysical research in Hokkaido University, Japan.

Authors:  Tomoyasu Aizawa; Makoto Demura; Kazutoshi Gohara; Hisashi Haga; Koichiro Ishimori; Masataka Kinjo; Tamiki Komatsuzaki; Katsumi Maenaka; Min Yao
Journal:  Biophys Rev       Date:  2020-04-28

Review 2.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

3.  Conformational dynamics of a multidomain protein by neutron scattering and computational analysis.

Authors:  Hiroshi Nakagawa; Tomohide Saio; Michihiro Nagao; Rintaro Inoue; Masaaki Sugiyama; Satoshi Ajito; Taiki Tominaga; Yukinobu Kawakita
Journal:  Biophys J       Date:  2021-07-07       Impact factor: 3.699

4.  Conformational ensemble of a multidomain protein explored by Gd3+ electron paramagnetic resonance.

Authors:  Tomohide Saio; Soya Hiramatsu; Mizue Asada; Hiroshi Nakagawa; Kazumi Shimizu; Hiroyuki Kumeta; Toshikazu Nakamura; Koichiro Ishimori
Journal:  Biophys J       Date:  2021-07-07       Impact factor: 3.699

Review 5.  Biological phase separation: cell biology meets biophysics.

Authors:  Takuya Yoshizawa; Ryu-Suke Nozawa; Tony Z Jia; Tomohide Saio; Eiichiro Mori
Journal:  Biophys Rev       Date:  2020-03-18

6.  Integrated bio-metal science: New frontiers of bio-metal science opened with cutting-edge techniques.

Authors:  Hitomi Sawai; Koichiro Ishimori
Journal:  Biophys Physicobiol       Date:  2020-08-28
  6 in total

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