| Literature DB >> 30922931 |
A Wolfensberger1, W Jakob2, M Faes Hesse3, S P Kuster3, A H Meier3, P W Schreiber3, L Clack3, H Sax3.
Abstract
OBJECTIVES: Conducting manual surveillance of non-ventilator-associated hospital-acquired pneumonia (nvHAP) using ECDC (European Centre for Disease Prevention and Control) surveillance criteria is very resource intensive. We developed and validated a semi-automated surveillance system for nvHAP, and describe nvHAP incidence and aetiology at our hospital.Entities:
Keywords: Automated surveillance; Electronic medical records; Hospital-acquired infections; Hospital-acquired pneumonia; Infection prevention
Mesh:
Year: 2019 PMID: 30922931 PMCID: PMC7128786 DOI: 10.1016/j.cmi.2019.03.019
Source DB: PubMed Journal: Clin Microbiol Infect ISSN: 1198-743X Impact factor: 8.067
Fig. 1Semi-automatic surveillance scheme. Patients are classified by a computerized classification algorithm to either being ‘not at risk’ or ‘at risk’ for non-ventilator-associated hospital-acquired pneumonia (nvHAP). Patients ‘at risk’ undergo further manual evaluation for nvHAP.
Validation of semi-automated surveillance
| Validation sample 1 ( | Validation sample 2 ( | Validation sample 3 ( | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cross tabulation of full manual surveillance x semi-automated surveillance | Full manual surveillance | Full manual surveillance | Full manual surveillance | |||||||||
| nvHAP | No nvHAP | nvHAP | No nvHAP | nvHAP | No nvHAP | |||||||
| Semi-automated surveillance | nvHAP | 4 | 0 | Semi-automated surveillance | nvHAP | 155 | 0 | Semi-automated surveillance | nvHAP | 35 | 0 | |
| No nvHAP | 0 | 696 | No nvHAP | 4 | 478 | No nvHAP | 0 | 719 | ||||
| Sensitivity | 100% (CI: 39.8–100%) | 97.5% (CI: 93.7–99.3%) | 100% (CI: 90.0–100%) | |||||||||
| Negative predictive value | 100% (CI: 99.5–100%) | 99.2% (CI: 97.9–99.8%) | 100% (CI: 99.5–100%) | |||||||||
| Accuracy | 100% (CI: 99.5–100%) | 99.4% (CI: 98.4–99.8%) | 100% (CI: 99.5–100%) | |||||||||
CI, 95% confidence interval; nvHAP, non-ventilator-associated hospital-acquired pneumonia.
Validation of ‘semi-automated surveillance’ (i.e. applying classification algorithm—to reduce number of patients needed to screen, i.e. ‘at-risk’ patients—followed by manual surveillance of ‘at-risk’ patients) by ‘full manual surveillance’ (i.e. manual surveillance of all patients) was performed on three ‘validation samples’. Fourfold tables and sensitivity, negative predictive value, and accuracy are presented for each validation sample separately.
Incidence of non-ventilator-associated hospital-acquired pneumonia (nvHAP) per medical specialty
| Patients with nvHAP in % (95%CI) | nvHAP/1000 patient days (95%CI) | |
|---|---|---|
| Overall UHZ | 0.65 (0.57–0.73) | 0.83 (0.73–0.94) |
| Internal medicine and subspecialties | 0.83 (0.67–1.02) | 1.06 (0.85–1.30) |
| Oncology and haematology | 1.97 (1.45–2.61) | 1.57 (1.16–2.09) |
| Abdominal and urogenital surgery | 0.57 (0.37–0.85) | 0.72 (0.46–1.07) |
| Cardiac and thoracic surgery | 1.37 (0.95–1.91) | 1.05 (0.73–1.47) |
| Traumatology and plastic surgery | 0.53 (0.33–0.80) | 0.74 (0.46–1.11) |
| Eye, ear, head and neck surgery | 0.06 (0.01–0.17) | 0.14 (0.03–0.41) |
| Neurology and neurosurgery | 0.69 (0.45–1.03) | 0.69 (0.45–1.03) |
| Gynaecology and obstetrics | 0.09 (0.03 -0.20) | 0.16 (0.06–0.35) |
UHZ, University Hospital Zurich.
Number of patients in 2017: +, <100 patients; ++, 100–500 patients; +++, 500–1000 patients; ++++, 1000–2000 patients; +++++, >2000 patients.
Internal medicine (patients in 2017: ++++), angiology (+++), cardiology (+++++), dermatology (++++), emergency medicine (+), endocrinology (++), gastroenterology (++++), geriatrics (++), immunology (+), infectious diseases (++), nephrology (++), pneumology (++++), and rheumatology (+++).
Haematology (++++), nuclear medicine (++), oncology (++++), and radio-oncology (++).
Visceral surgery (+++++) and urology (++++).
Cardiac surgery (++++) and thoracic surgery (+++).
Traumatology (+++++) and plastic surgery (++++).
Ophthalmology (++++), oral and maxillofacial surgery (+++), and otorhinolaryngology (+++++).
Neurology (++++), neuroradiology (++), neurosurgery (++++), and psychiatry (++).
Gynecology (+++++) and obstetrics (+++++).
Microbiological aetiology of non-ventilator-associated hospital-acquired pneumonia (nvHAP)
| Sputum, tracheal aspirate or upper respiratory tract specimen | ‘Good quality’ sputum, tracheal aspirate or upper respiratory tract specimen (i.e. SEC <10/LPF) | Bronchoalveolar lavage, endobronchial aspirate, tissue sample | Blood culture, antigen detection in blood or urine | Any microbiological sampling method | |
|---|---|---|---|---|---|
| Number of patients sampled (% of all patients with nvHAP) | 123 (48) | 123 (48) | 10 (4) | 191 (76) | 215 (84) |
| Number of patients (% of sampled patients) | |||||
| | 11 (9) | 4 (3) | 0 | 3 (2) | 12 (6) |
| | 1 (1) | 0 | 0 | 1 (1) | 2 (1) |
| Streptococci, other than | 3 (2) | 0 | 0 | 0 | 3 (1) |
| Enterococci | 9 (7) | 4 (3) | 2 (20) | 0 | 11 (5) |
| Other gram-positive | 0 | 0 | 1 (10) | 0 | 1 (0) |
| | 11 (9) | 5 (4) | 1 (10) | 2 (1) | 14 (7) |
| | 9 (7) | 2 (2) | 1 (10) | 1 (1) | 11 (5) |
| | 4 (3) | 2 (2) | 0 | 0 | 4 (2) |
| | 5 (4) | 2 (2) | 1 (10) | 1 (1) | 6 (3) |
| | 8 (7) | 2 (2) | 0 | 0 | 8 (4) |
| Other Enterobacteriaceae | 7 (6) | 8 (7) | 0 | 0 | 7 (3) |
| | 8 (7) | 5 (4) | 0 | 5 (3) | 13 (6) |
| | 3 (2) | 2 (2) | 0 | 0 | 3 (1) |
| Other non-Enterobacteriaceae bacilli | 7 (6) | 0 | 0 | 0 | 7 (3) |
| 25 (20) | 11 (9) | 0 | 0 | 25 (12) | |
| Viral pathogens | 12 (10) | 1 (10) | 0 | 13 (6) | |
| | 0 | 0 | 1 (10) | 2 (1) | 3 (1) |
LPF, low-power field; SEC, squamous epithelial cells.
Coagulase-negative staphylococci.
Citrobacter sp., Morganella morganii.
Moraxella catharalis, Haemophilus sp.
More than one pathogen detectable in sample(s), oral flora not considered relevant if other pathogen detectable.
Rhinovirus (n = 5), coronavirus (n = 2), metapneumovirus (n = 2), adenovirus (n = 1), herpes simplex virus (n = 1), parainfluenzavirus (n = 1), respiratory syncytial virus (n = 1).