Literature DB >> 30921557

Development of a virtual reality platform for effective communication of structural data in drug discovery.

Laura J Kingsley1, Vincent Brunet2, Gerald Lelais1, Steve McCloskey2, Kelly Milliken1, Edgardo Leija2, Stephen R Fuhs1, Kai Wang2, Edward Zhou2, Glen Spraggon3.   

Abstract

In drug discovery, structural knowledge of a target enables structure-based design approaches and thereby reduces the time and labor required to develop a therapy. Whilst molecular graphics frameworks coupled with computational analysis are now ubiquitous tools for the structural and computational biologist, sharing the detailed visualization and derived structural information with non-expert users still presents a challenge. Here we describe an intuitive virtual world for viewing, manipulating, and modifying chemical and macromolecular structures in a fully immersive and collaborative 3D environment. By reducing the barriers to viewing and interacting with structural data, structural analysis can be democratized to a general scientist, which in turn fosters novel collaboration, ideas, and findings in structural biology and structure-based drug discovery.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2019        PMID: 30921557     DOI: 10.1016/j.jmgm.2019.03.010

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  7 in total

1.  Peppy: A virtual reality environment for exploring the principles of polypeptide structure.

Authors:  David G Doak; Gareth S Denyer; Juliet A Gerrard; Joel P Mackay; Jane R Allison
Journal:  Protein Sci       Date:  2019-11-11       Impact factor: 6.725

2.  Design, construction and in vivo functional assessment of a hinge truncated sFLT01.

Authors:  Fahimeh Zakeri; Hamid Latifi-Navid; Zahra-Soheila Soheili; Mehdi Sadeghi; Seyed Shahriar Arab; Shahram Samiei; Ehsan Ranaei Pirmardan; Sepideh Taghizadeh; Hamid Ahmadieh; Ali Hafezi-Moghadam
Journal:  Gene Ther       Date:  2022-09-16       Impact factor: 4.184

3.  A Brave New World: Virtual Reality and Augmented Reality in Systems Biology.

Authors:  Berk Turhan; Zeynep H Gümüş
Journal:  Front Bioinform       Date:  2022-04-06

4.  Interactive Molecular Dynamics in Virtual Reality Is an Effective Tool for Flexible Substrate and Inhibitor Docking to the SARS-CoV-2 Main Protease.

Authors:  Helen M Deeks; Rebecca K Walters; Jonathan Barnoud; David R Glowacki; Adrian J Mulholland
Journal:  J Chem Inf Model       Date:  2020-11-11       Impact factor: 4.956

Review 5.  Open-Source Browser-Based Tools for Structure-Based Computer-Aided Drug Discovery.

Authors:  Ann Wang; Jacob D Durrant
Journal:  Molecules       Date:  2022-07-20       Impact factor: 4.927

6.  A virtual reality classroom to teach and explore crystal solid state structures.

Authors:  Erica Stella; Isabella Agosti; Nicoletta Di Blas; Marco Finazzi; Pier Luca Lanzi; Daniele Loiacono
Journal:  Multimed Tools Appl       Date:  2022-08-11       Impact factor: 2.577

Review 7.  An immersive journey to the molecular structure of SARS-CoV-2: Virtual reality in COVID-19.

Authors:  Martín Calvelo; Ángel Piñeiro; Rebeca Garcia-Fandino
Journal:  Comput Struct Biotechnol J       Date:  2020-09-18       Impact factor: 7.271

  7 in total

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