| Literature DB >> 30916466 |
Radivojka Bánová Vulić1, Martina Zdurienčíková1, Silvia Tyčiaková1, Oldřich Benada2, Mária Dubrovčáková1, Ján Lakota1,3,4, Ľudovít Škultéty1,2.
Abstract
We report results showing that the silencing of carbonic anhydrase I (siCA1) in prostatic (PC3) tumour cells has a significant impact on exosome formation. An increased diameter, concentration and diversity of the produced exosomes were noticed as a consequence of this knock-down. The protein composition of the exosomes' cargo was also altered. Liquid chromatography and mass spectrometry analyses identified 42 proteins significantly altered in PC3 siCA1 exosomes compared with controls. The affected proteins are mainly involved in metabolic processes, biogenesis, cell component organization and defense/immunity. Interestingly, almost all of them have been described as 'enhancers' of tumour development through the promotion of cell proliferation, migration and invasion. Thus, our results indicate that the reduced expression of the CA1 protein enhances the malignant potential of PC3 cells.Entities:
Keywords: LC-MS; PC3 cells; carbonic anhydrase I; exosomes; malignant potential; siCA1; siMock
Mesh:
Substances:
Year: 2019 PMID: 30916466 PMCID: PMC6484292 DOI: 10.1111/jcmm.14265
Source DB: PubMed Journal: J Cell Mol Med ISSN: 1582-1838 Impact factor: 5.310
Figure 1Efficacy of CA1 transcriptional silencing. (A) A light‐microscope image of PC3 cells after silencing of carbonic anhydrase I (siCA1) transfection compared to PC3 cells transfected with Mock siRNA. Eighteen hours after transfection, the medium was changed to a foetal calf serum (FCS)/antibiotic (ATB) free medium and the cells were incubated for 48 h at 37°C. Magnification 100×. (B) Gene expression analysis of silenced CA1 mRNA; reverse transcriptase quantitative PCR (RT‐qPCR) analysis. (C) Western blot analysis indicating reduced amount of Carbonic anhydrase I (CA I) protein after CA1 mRNA silencing in PC3 tumour cells. Beta‐actin was used as a normalization control
Figure 2Characterization of PC3 silencing of carbonic anhydrase I (siCA1) and PC3 siMock isolated exosomes (A) Representative transmission electron microscopy (TEM) images. Five microlitres of PC3 siCA1 and PC3 siMock exosomes were placed on a carbon/formvar grid, negatively stained with 1% ammonium molybdate + 0.1% trehalose and examined with a FEI Morgagni transmission electron microscope operating at 80 kV. Scale bar: 200; 500 nm. (B) Representative nanoparticle tracking analysis (NTA) of isolated exosomes. Isolated exosomes were diluted to a suitable concentration with phosphate‐buffered saline (PBS) (1800x; siCA1 as well as control siMock), and the size distribution was analysed by NTA using a NanoSight NS500 (for each sample 3 × 60 second runs; for error bars indicating ±standard error of the mean/mode and final nanoparticle concentration see Figure 3)
Figure 3Comparative characterization of PC3 silencing of carbonic anhydrase I (siCA1) and PC3 siMock isolated exosomes. (A) Exosomal size determined by nanoparticle tracking analysis (NTA). Comparison of vesicle sizes shows that PC3 siCA1 exosomes are significantly larger than exosomes isolated from control PC3 siMock cells (unpaired t test, mean: PC3 siCA1 vs. PC3 siMock, P = 0.005200259, P < 0.01**; mode: PC3 siCA1 vs. PC3 siMock, P = 0.00914921, P < 0.01**). (B) The concentrations of nano‐sized particles in exosome suspension measured by NanoSight system. The concentration of PC3 si CA1 nanoparticles was significantly higher in comparison to nanoparticles from PC3 siMock control cells (PC3 siCA1 average concentration = 3.02E+11, SD = 5.48E+10; PC3 siMock average concentration = 1.75E+11, SD = 1.81E+10; unpaired t test, PC3 siCA1 vs. PC3 siMock, P = 0.006857836, P < 0.01**). Values are mean ± standard deviation, all values are representative of three independent experiments with three replicates. (C) Verification of exosome specific markers CD63 and TSG 101 by ELISA. The absorbance at 492 nm was measured with a xMark Microplate absorbance spectrophotometre. NC‐negative control. (D) Western Blot analysis demonstrating the expression of TSG 101 and CD 9 markers in PC3 siCA1 vs. PC3 siMock derived exosomes. (E) SDS‐PAGE analysis of exosomal protein pattern. Protein (20 µg) from exosomes prepared from PC3 siCA1 or PC3 siMock cells were separated by 12% SDS‐PAGE and stained by Coomassie Blue to illustrate the differences in protein profile
Identification of exosome—associated proteins.
| Accession | Peptides | Score | ANOVA (p) | Fold | log 2 (fold) | Description/molecular function | Average normalised abundances | Localization | |
|---|---|---|---|---|---|---|---|---|---|
| Mock | siCA1 | ||||||||
|
| |||||||||
| P63104 | 5 (4) | 43.73 | 6.32E−03 | 2.08 | 1.06 | 14‐3‐3 protein zeta/delta OS = Homo sapiens GN = YWHAZ PE = 1 SV = 1 | 532.14 | 1104.66 | Cytoplasm |
| P43686 | 4 (4) | 33.23 | 7.16E−03 | 2.16 | 1.11 | 26S protease regulatory subunit 6B OS = Homo sapiens GN = PSMC4 PE = 1 SV = 2 | 367.91 | 796.05 | Nucleus |
| P35998 | 2 (2) | 12.88 | 1.88E−03 | 1.99 | 0.99 | 26S protease regulatory subunit 7 OS = Homo sapiens GN = PSMC2 PE = 1 SV = 3 | 437.08 | 869.42 | Cytoplasm |
| P07355 | 7 (6) | 70.95 | 3.01E−03 | 2.13 | 1.09 | Annexin A2 OS = Homo sapiens GN = ANXA2 PE = 1 SV = 2 | 1131.16 | 2409.8 | Extracellular matrix, secretion |
| P01024 | 2 (2) | 19.10 | 0.01 | 3.09 | 1.63 | Complement C3 OS = Homo sapiens GN = C3 PE = 1 SV = 2 | 457.65 | 1414.35 | Extracellular matrix, secretion |
| P62807 | 7 (6) | 67.80 | 0.03 | 1.90 | 0.93 | Histone H2B OS = Homo sapiens GN = HIST1H2BF PE = 2 SV = 1 | 2365.09 | 4503.56 | Nucleus |
| P62805 | 5 (5) | 53.81 | 0.04 | 3.31 | 1.73 | Histone H4 OS = Homo sapiens GN = HIST1H4A PE = 1 SV = 2 | 578.73 | 174.87 | Nucleus |
| P0DMV9 | 7 (3) | 61.09 | 0.04 | 1.86 | 0.90 | Heat shock 70 kDa protein 1B OS = Homo sapiens GN = HSPA1B PE = 1 SV = 1 | 391.3 | 726.97 | Cytoskeletion, centrosome |
| P04792 | 5 (4) | 55.78 | 0.03 | 1.85 | 0.89 | Heat shock protein beta‐1 OS = Homo sapiens GN = HSPB1 PE = 1 SV = 2 | 660.19 | 1220.52 | Nucleus, cytoplasm |
| P31943 | 2 (2) | 13.70 | 0.03 | 1.93 | 0.95 | Heterogeneous nuclear ribonucleoprotein H OS = Homo sapiens GN = HNRNPH1 PE = 1 SV = 1 | 161.52 | 312.05 | Nucleus |
| Q14974 | 6 (6) | 48.45 | 0.04 | 1.58 | 0.66 | Importin subunit beta‐1 OS = Homo sapiens GN = KPNB1 PE = 1 SV = 2 | 618.02 | 979.23 | Nucleus, cytoplasm |
| P01130 | 4 (4) | 33.29 | 3.17E−03 | 2.74 | 1.45 | Low‐density lipoprotein receptor OS = Homo sapiens GN = LDLR PE = 1 SV = 1 | 243.49 | 667.06 | Membrane, endosomes, GA |
| P35579 | 6 (6) | 45.79 | 1.31E−06 | 3.24 | 1.70 | Myosin‐9 OS = Homo sapiens GN = MYH9 PE = 1 SV = 4 | 303.04 | 981.28 | Cytoskeletion |
| Q15149 | 2 (2) | 18.81 | 4.58E−03 | 2.61 | 1.38 | Plectin (Fragment) OS = Homo sapiens GN = PLEC PE = 1 SV = 1 | 252.03 | 657.22 | Cytoskeletion |
| P09874 | 2 (2) | 18.84 | 0.01 | 2.84 | 1.51 | Poly [ADP‐ribose] polymerase 1 OS = Homo sapiens GN = PARP1 PE = 1 SV = 4 | 105.09 | 298.46 | Nucleus |
| Q16799 | 2 (1) | 24.71 | 1.30E−05 | 2.77 | 1.47 | Reticulon OS = Homo sapiens GN = RTN1 PE = 1 SV = 1 | 286.49 | 794.43 | Endoplasmatic reticulum |
| P62140 | 2 (2) | 20.67 | 2.14E−05 | 5.00 | 2.32 | Serine/threonine‐protein phosphatase PP1‐beta catalytic subunit OS = Homo sapiens GN = PPP1CB PE = 1 SV = 3 | 299.16 | 1495.44 | Nucleus |
| P48643 | 8 (6) | 73.19 | 3.41E−03 | 1.61 | 0.69 | T‐complex protein 1 subunit epsilon OS = Homo sapiens GN = CCT5 PE = 1 SV = 1 | 1366.32 | 2204.6 | Cytoskeletion |
| Q99832 | 7 (6) | 68.33 | 5.85E−03 | 2.29 | 1.20 | T‐complex protein 1 subunit eta OS = Homo sapiens GN = CCT7 PE = 1 SV = 2 | 864.32 | 1975.35 | Cytoplasm |
| P78371 | 7 (6) | 61.93 | 0.04 | 1.50 | 0.58 | T‐complex protein 1 subunit beta OS = Homo sapiens GN = CCT2 PE = 1 SV = 4 | 908.71 | 1366.06 | Cytoplasm |
| Q9BUF5 | 9 (2) | 66.65 | 6.31E−03 | 3.63 | 1.86 | Tubulin beta‐6 chain OS = Homo sapiens GN = TUBB6 PE = 1 SV = 1 | 47.35 | 171.88 | Cytoskeletion |
| P07996 | 2 (2) | 13.57 | 1.27E−04 | 2.53 | 1.34 | Thrombospondin‐1 OS = Homo sapiens GN = THBS1 PE = 1 SV = 2 | 298.54 | 755.51 | Endoplasmatic reticulum extracellular matrix |
| P13010 | 11 (11) | 99.67 | 4.46E−03 | 1.95 | 0.96 | X‐ray repair cross‐complementing protein 5 OS = Homo sapiens GN = XRCC5 PE = 1 SV = 3 | 1029.18 | 2002.42 | Nucleus |
| Q9Y2P7 | 2 (1) | 18.82 | 1.41E−04 | 3.75 | 1.91 | Zinc finger protein 256 OS = Homo sapiens GN = ZNF256 PE = 4 SV = 1 | 19.27 | 72.33 | Nucleus |
|
| |||||||||
| P43686 | 4 (4) | 33.23 | 7.16E−03 | 2.16 | 1.11 | 26S protease regulatory subunit 6B OS = Homo sapiens GN = PSMC4 PE = 1 SV = 2 | 367.91 | 796.05 | Nucleus |
| P35998 | 2 (2) | 12.88 | 1.88E−03 | 1.99 | 0.99 | 26S protease regulatory subunit 7 OS = Homo sapiens GN = PSMC2 PE = 1 SV = 3 | 437.08 | 869.42 | Cytoplasm |
| P01024 | 2 (2) | 19.10 | 0.01 | 3.09 | 1.63 | Complement C3 OS = Homo sapiens GN = C3 PE = 1 SV = 2 | 457.65 | 1414.35 | Extracellular matrix, secretion |
| P11586 | 2 (2) | 18.33 | 3.43E−03 | 2.41 | 1.27 | C‐1‐tetrahydrofolate synthase_ cytoplasmic OS = Homo sapiens GN = MTHFD1 PE = 1 SV = 1 | 119.51 | 288.08 | Cytoplasm |
| P26641 | 7 (6) | 58.66 | 1.56E−04 | 1.98 | 0.99 | Elongation factor 1‐gamma OS = Homo sapiens GN = EEF1G PE = 1 SV = 3 | 559.55 | 1108.5 | Cytoplasm |
| P0DMV9 | 7 (3) | 61.09 | 0.04 | 1.86 | 0.90 | Heat shock 70 kDa protein 1B OS = Homo sapiens GN = HSPA1B PE = 1 SV = 1 | 391.3 | 726.97 | Cytoskeletion, centrosome |
| P04792 | 5 (4) | 55.78 | 0.03 | 1.85 | 0.89 | Heat shock protein beta‐1 OS = Homo sapiens GN = HSPB1 PE = 1 SV = 2 | 660.19 | 1220.52 | Nucleus, cytoplasm |
| P35579 | 6 (6) | 45.79 | 1.31E−06 | 3.24 | 1.70 | Myosin‐9 OS = Homo sapiens GN = MYH9 PE = 1 SV = 4 | 303.04 | 981.28 | Cytoskeletion |
| Q14697 | 4 (4) | 34.09 | 0.01 | 2.57 | 1.36 | Neutral alpha‐glucosidase AB OS = Homo sapiens GN = GANAB PE = 1 SV = 1 | 194.31 | 499.1 | Endoplasmatic reticulum, Golgi aparatus |
| P14618 | 22 (20) | 224.48 | 2.91E−06 | 1.99 | 0.99 | Pyruvate kinase PKM OS = Homo sapiens GN = PKM PE = 1 SV = 4 | 3161.71 | 6281.27 | Cytoplasm |
| Q92626 | 12 (12) | 101.96 | 2.13E−04 | 2.07 | 1.05 | Peroxidasin homolog OS = Homo sapiens GN = PXDN PE = 1 SV = 2 | 1346.04 | 2780.28 | Extracelular matrix, secretion |
| O14818 | 7 (6) | 71.05 | 4.55E−03 | 2.46 | 1.30 | Proteasome subunit alpha type‐7 OS = Homo sapiens GN = PSMA7 PE = 1 SV = 1 | 887.97 | 2180.2 | Nucleus |
| P25786 | 5 (5) | 54.34 | 2.06E−03 | 1.97 | 0.98 | Proteasome subunit alpha type‐1 OS = Homo sapiens GN = PSMA1 PE = 1 SV = 1 | 1220.78 | 2401.13 | Nucleus |
| P21980 | 3 (3) | 19.12 | 5.80E−06 | 3.60 | 1.85 | Protein‐glutamine gamma‐glutamyltransferase 2 OS = Homo sapiens GN = TGM2 PE = 1 SV = 2 | 194.67 | 700.1 | Mitochondrion, cytoplasm |
| P62140 | 2 (2) | 20.67 | 2.14E−05 | 5.00 | 2.32 | Serine/threonine‐protein phosphatase PP1‐beta catalytic subunit OS = Homo sapiens GN = PPP1CB PE = 1 SV = 3 | 299.16 | 1495.44 | Nucleus |
| P26639 | 2 (2) | 20.76 | 1.93E−03 | 2.96 | 1.57 | Threonine—tRNA ligase cytoplasmic OS = Homo sapiens GN = TARS PE = 1 SV = 3 | 263.88 | 781.32 | Cytoplasm |
| P60174 | 2 (2) | 16.70 | 0.03 | 14.94 | 3.90 | Triosephosphate isomerase OS = Homo sapiens GN = TPI1 PE = 1 SV = 3 | 24.27 | 362.52 | Cytoplasm |
|
| |||||||||
| P08865 | 9 (8) | 78.96 | 2.50E−03 | 1.91 | 0.93 | 40S ribosomal protein SA OS = Homo sapiens GN = RPSA PE = 1 SV = 1 | 1045.46 | 1995.95 | Nucleus |
| P68032 | 11 (4) | 110.00 | 5.36E−03 | 2.78 | 1.48 | Actin_ alpha cardiac muscle 1 OS = Homo sapiens GN = ACTC1 PE = 1 SV = 1 | 584.62 | 1626.59 | Cytoskeletion |
| P31943 | 2 (2) | 13.70 | 0.03 | 1.93 | 0.95 | Heterogeneous nuclear ribonucleoprotein H OS = Homo sapiens GN = HNRNPH1 PE = 1 SV = 1 | 161.52 | 312.05 | Nucleus |
| Q15149 | 2 (2) | 18.81 | 4.58E−03 | 2.61 | 1.38 | Plectin (Fragment) OS = Homo sapiens GN = PLEC PE = 1 SV = 1 | 252.03 | 657.22 | Cytoskeletion |
| Q9BUF5 | 9 (2) | 66.65 | 6.31E−03 | 3.63 | 1.86 | Tubulin beta‐6 chain OS = Homo sapiens GN = TUBB6 PE = 1 SV = 1 | 47.35 | 171.88 | Cytoskeletion |
|
| |||||||||
| P13639 | 18 (17) | 191.62 | 5.30E−03 | 2.74 | 1.45 | Elongation factor 2 OS = Homo sapiens GN = EEF2 PE = 1 SV = 4 | 3820.7 | 1.05E+04 | Nucleus |
|
| |||||||||
| Q6S8J3 | 13 (3) | 138.63 | 1.01E−06 | 2.91 | 1.54 | POTE ankyrin domain family member E OS = Homo sapiens GN = POTEE PE = 1 SV = 3 | 142.49 | 414.62 | Extracellular matrix, secretion |
|
| |||||||||
| P14625 | 13 (12) | 129.22 | 0.02 | 1.72 | 0.78 | Endoplasmin OS = Homo sapiens GN = HSP90B1 PE = 1 SV = 1 | 1779.22 | 3061.84 | Endoplasmatic reticulum |
|
| |||||||||
| Q92626 | 12 (12) | 101.96 | 2.13E−04 | 2.07 | 1.05 | Peroxidasin homolog OS = Homo sapiens GN = PXDN PE = 1 SV = 2 | 1346.04 | 2780.28 | Extracelular matrix, secretion |
|
| |||||||||
| Q14974 | 6 (6) | 48.45 | 0.04 | 1.58 | 0.66 | Importin subunit beta‐1 OS = Homo sapiens GN = KPNB1 PE = 1 SV = 2 | 618.02 | 979.23 | Nucleus, cytoplasm |
|
| |||||||||
| P24821 | 5 (4) | 46.13 | 2.93E−03 | 3.4 | 1.77 | Tenascin OS = Homo sapiens GN = TNC PE = 1 SV = 3 | 190.92 | 649.52 | Extracellular matrix, secretion |
|
| |||||||||
| P01130 | 4 (4) | 33.29 | 3.17E−03 | 2.74 | 1.45 | Low‐density lipoprotein receptor OS = Homo sapiens GN = LDLR PE = 1 SV = 1 | 243.49 | 667.06 | Membrane, endosomes, GA |
Proteomic profiles from PC3 siCA1 and control PC3 siMock derived exosomes were compared. Proteins with more than 2 matching peptides, statistically significant (p < 0.05) and with more than 1.5‐fold expression (and log2 transformed fold change), were further functionally categorized and listed in this table.
Figure 4PANTHER gene ontology enrichment analysis of statistically changed proteins from PC3 silencing of carbonic anhydrase I (siCA1) derived exosomes. Enrichment analyses were performed in terms of protein class (A), molecular function (B), cellular component (C) and biological process (D)