Literature DB >> 30913332

Mirror-Image Oligonucleotides: History and Emerging Applications.

Brian E Young1, Nandini Kundu1, Jonathan T Sczepanski1.   

Abstract

As chiral molecules, naturally occurring d-oligonucleotides have enantiomers, l-DNA and l-RNA, which are comprised of l-(deoxy)ribose sugars. These mirror-image oligonucleotides have the same physical and chemical properties as that of their native d-counterparts, yet are highly orthogonal to the stereospecific environment of biology. Consequently, l-oligonucleotides are resistant to nuclease degradation and many of the off-target interactions that plague traditional d-oligonucleotide-based technologies; thus making them ideal for biomedical applications. Despite a flurry of interest during the early 1990s, the inability of d- and l-oligonucleotides to form contiguous Watson-Crick base pairs with each other has ultimately led to the perception that l-oligonucleotides have only limited utility. Recently, however, scientists have begun to uncover novel strategies to harness the bio-orthogonality of l-oligonucleotides, while overcoming (and even exploiting) their inability to Watson-Crick base pair with the natural polymer. Herein, a brief history of l-oligonucleotide research is presented and emerging l-oligonucleotide-based technologies, as well as their applications in research and therapy, are presented.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA; RNA; chirality; oligonucleotides; spiegelmers

Mesh:

Substances:

Year:  2019        PMID: 30913332      PMCID: PMC6615976          DOI: 10.1002/chem.201900149

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  73 in total

1.  Retention and separation of adenosine and analogues by affinity chromatography with an aptamer stationary phase.

Authors:  Q Deng; I German; D Buchanan; R T Kennedy
Journal:  Anal Chem       Date:  2001-11-15       Impact factor: 6.986

2.  Linear 2' O-Methyl RNA probes for the visualization of RNA in living cells.

Authors:  C Molenaar; S A Marras; J C Slats; J C Truffert; M Lemaître; A K Raap; R W Dirks; H J Tanke
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

Review 3.  Nucleic acid aptamers-from selection in vitro to applications in vivo.

Authors:  M Famulok; G Mayer; M Blind
Journal:  Acc Chem Res       Date:  2000-09       Impact factor: 22.384

Review 4.  Toward third-generation aptamers: Spiegelmers and their therapeutic prospects.

Authors:  Axel Vater; Sven Klussmann
Journal:  Curr Opin Drug Discov Devel       Date:  2003-03

Review 5.  Spiegelmers: biostable aptamers.

Authors:  Dirk Eulberg; Sven Klussmann
Journal:  Chembiochem       Date:  2003-10-06       Impact factor: 3.164

6.  Inefficient bypass of an abasic site by DNA polymerase eta.

Authors:  L Haracska; M T Washington; S Prakash; L Prakash
Journal:  J Biol Chem       Date:  2000-12-05       Impact factor: 5.157

7.  DNA aptamers selected against the HIV-1 trans-activation-responsive RNA element form RNA-DNA kissing complexes.

Authors:  C Boiziau; E Dausse; L Yurchenko; J J Toulmé
Journal:  J Biol Chem       Date:  1999-04-30       Impact factor: 5.157

8.  Monocyclic L-nucleosides with type 1 cytokine-inducing activity.

Authors:  K S Ramasamy; R C Tam; J Bard; D R Averett
Journal:  J Med Chem       Date:  2000-03-09       Impact factor: 7.446

9.  A practical synthesis of L-FMAU from L-arabinose.

Authors:  J Du; Y Choi; K Lee; B K Chun; J H Hong; C K Chu
Journal:  Nucleosides Nucleotides       Date:  1999-02

10.  In vivo properties of an anti-GnRH Spiegelmer: an example of an oligonucleotide-based therapeutic substance class.

Authors:  Britta Wlotzka; Susanne Leva; Bernd Eschgfäller; Jens Burmeister; Frank Kleinjung; Christine Kaduk; Peter Muhn; Holger Hess-Stumpp; Sven Klussmann
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-17       Impact factor: 11.205

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  17 in total

1.  Heterochiral Nucleic Acid Circuits.

Authors:  Adam M Kabza; Brian E Young; Nandini Kundu; Jonathan T Sczepanski
Journal:  Emerg Top Life Sci       Date:  2019-08-28

Review 2.  Development of RNA G-quadruplex (rG4)-targeting L-RNA aptamers by rG4-SELEX.

Authors:  Mubarak I Umar; Chun-Yin Chan; Chun Kit Kwok
Journal:  Nat Protoc       Date:  2022-04-20       Impact factor: 13.491

Review 3.  Perspectives on conformationally constrained peptide nucleic acid (PNA): insights into the structural design, properties and applications.

Authors:  Chaturong Suparpprom; Tirayut Vilaivan
Journal:  RSC Chem Biol       Date:  2022-03-18

4.  Assembly of long L-RNA by native RNA ligation.

Authors:  Chen-Hsu Yu; Adam M Kabza; Jonathan T Sczepanski
Journal:  Chem Commun (Camb)       Date:  2021-10-12       Impact factor: 6.065

5.  Kinetics of heterochiral strand displacement from PNA-DNA heteroduplexes.

Authors:  Nandini Kundu; Brian E Young; Jonathan T Sczepanski
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

6.  Nuclease Hydrolysis Does Not Drive the Rapid Signaling Decay of DNA Aptamer-Based Electrochemical Sensors in Biological Fluids.

Authors:  Alexander Shaver; Nandini Kundu; Brian E Young; Philip A Vieira; Jonathan T Sczepanski; Netzahualcóyotl Arroyo-Currás
Journal:  Langmuir       Date:  2021-04-20       Impact factor: 3.882

7.  Direct Comparison of d-DNA and l-DNA Strand-Displacement Reactions in Living Mammalian Cells.

Authors:  Wenrui Zhong; Jonathan T Sczepanski
Journal:  ACS Synth Biol       Date:  2020-12-21       Impact factor: 5.110

8.  Addition of mirror-image L-DNA elements to DNA amplification circuits to distinguish leakage from target signal.

Authors:  Zackary A Zimmers; Nicholas M Adams; Frederick R Haselton
Journal:  Biosens Bioelectron       Date:  2021-05-18       Impact factor: 12.545

Review 9.  Diagnostic and Therapeutic Value of Aptamers in Envenomation Cases.

Authors:  Steven Ascoët; Michel De Waard
Journal:  Int J Mol Sci       Date:  2020-05-18       Impact factor: 5.923

10.  Circular L-RNA aptamer promotes target recognition and controls gene activity.

Authors:  Danyang Ji; Kaixin Lyu; Haizhou Zhao; Chun Kit Kwok
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

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