Literature DB >> 33501379

Heterochiral Nucleic Acid Circuits.

Adam M Kabza1, Brian E Young1, Nandini Kundu1, Jonathan T Sczepanski1.   

Abstract

The programmability of DNA/RNA-based molecular circuits provides numerous opportunities in the field of synthetic biology. However, the stability of nucleic acids remains a major concern when performing complex computations in biological environments. Our solution to this problem is L-(deoxy)ribose nucleic acids (L-DNA/RNA), which are mirror images (i.e. enantiomers) of natural D-nucleotides. L-oligonucleotides have the same physical and chemical properties as their natural counterparts, yet they are completely invisible to the stereospecific environment of biology. We recently reported a novel strand-displacement methodology for transferring sequence information between oligonucleotide enantiomers (which are incapable of base pairing with each other), enabling bio-orthogonal L-DNA/RNA circuits to be easily interfaced with living systems. In this perspective, we summarize these so-called "heterochiral" circuits, provide a viewpoint on their potential applications in synthetic biology, and discuss key problems that must be solved before achieving the ultimate goal of engineering complex and reliable functionality.

Entities:  

Year:  2019        PMID: 33501379      PMCID: PMC7832003          DOI: 10.1042/etls20190102

Source DB:  PubMed          Journal:  Emerg Top Life Sci        ISSN: 2397-8554


  35 in total

Review 1.  Dynamic DNA nanotechnology using strand-displacement reactions.

Authors:  David Yu Zhang; Georg Seelig
Journal:  Nat Chem       Date:  2011-02       Impact factor: 24.427

2.  Riboregulated toehold-gated gRNA for programmable CRISPR-Cas9 function.

Authors:  Ka-Hei Siu; Wilfred Chen
Journal:  Nat Chem Biol       Date:  2018-12-10       Impact factor: 15.040

3.  Synthesis and characterization of conformationally preorganized, (R)-diethylene glycol-containing γ-peptide nucleic acids with superior hybridization properties and water solubility.

Authors:  Bichismita Sahu; Iulia Sacui; Srinivas Rapireddy; Kimberly J Zanotti; Raman Bahal; Bruce A Armitage; Danith H Ly
Journal:  J Org Chem       Date:  2011-06-15       Impact factor: 4.354

4.  Multivalent N-acetylgalactosamine-conjugated siRNA localizes in hepatocytes and elicits robust RNAi-mediated gene silencing.

Authors:  Jayaprakash K Nair; Jennifer L S Willoughby; Amy Chan; Klaus Charisse; Md Rowshon Alam; Qianfan Wang; Menno Hoekstra; Pachamuthu Kandasamy; Alexander V Kel'in; Stuart Milstein; Nate Taneja; Jonathan O'Shea; Sarfraz Shaikh; Ligang Zhang; Ronald J van der Sluis; Michael E Jung; Akin Akinc; Renta Hutabarat; Satya Kuchimanchi; Kevin Fitzgerald; Tracy Zimmermann; Theo J C van Berkel; Martin A Maier; Kallanthottathil G Rajeev; Muthiah Manoharan
Journal:  J Am Chem Soc       Date:  2014-12-01       Impact factor: 15.419

5.  Synthesis and properties of mirror-image DNA.

Authors:  H Urata; E Ogura; K Shinohara; Y Ueda; M Akagi
Journal:  Nucleic Acids Res       Date:  1992-07-11       Impact factor: 16.971

6.  L-DNAs as potential antimessenger oligonucleotides: a reassessment.

Authors:  A Garbesi; M L Capobianco; F P Colonna; L Tondelli; F Arcamone; G Manzini; C W Hilbers; J M Aelen; M J Blommers
Journal:  Nucleic Acids Res       Date:  1993-09-11       Impact factor: 16.971

7.  Stereospecificity of oligonucleotide interactions revisited: no evidence for heterochiral hybridization and ribozyme/DNAzyme activity.

Authors:  Kai Hoehlig; Lucas Bethge; Sven Klussmann
Journal:  PLoS One       Date:  2015-02-13       Impact factor: 3.240

8.  A cross-chiral RNA polymerase ribozyme.

Authors:  Jonathan T Sczepanski; Gerald F Joyce
Journal:  Nature       Date:  2014-10-29       Impact factor: 49.962

9.  Biostable L-DNAzyme for Sensing of Metal Ions in Biological Systems.

Authors:  Liang Cui; Ruizi Peng; Ting Fu; Xiaobing Zhang; Cuichen Wu; Huapei Chen; Hao Liang; Chaoyong James Yang; Weihong Tan
Journal:  Anal Chem       Date:  2016-01-15       Impact factor: 6.986

10.  Computing in mammalian cells with nucleic acid strand exchange.

Authors:  Benjamin Groves; Yuan-Jyue Chen; Chiara Zurla; Sergii Pochekailov; Jonathan L Kirschman; Philip J Santangelo; Georg Seelig
Journal:  Nat Nanotechnol       Date:  2015-12-21       Impact factor: 39.213

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  2 in total

1.  Direct Comparison of d-DNA and l-DNA Strand-Displacement Reactions in Living Mammalian Cells.

Authors:  Wenrui Zhong; Jonathan T Sczepanski
Journal:  ACS Synth Biol       Date:  2020-12-21       Impact factor: 5.110

Review 2.  Advances in Therapeutic L-Nucleosides and L-Nucleic Acids with Unusual Handedness.

Authors:  Yuliya Dantsu; Ying Zhang; Wen Zhang
Journal:  Genes (Basel)       Date:  2021-12-24       Impact factor: 4.096

  2 in total

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