Literature DB >> 30908940

Genetic Advances in Chronic Obstructive Pulmonary Disease. Insights from COPDGene.

Margaret F Ragland1, Christopher J Benway2, Sharon M Lutz3, Russell P Bowler4, Julian Hecker5, John E Hokanson6, James D Crapo4, Peter J Castaldi2, Dawn L DeMeo2,7, Craig P Hersh2,7, Brian D Hobbs2,7, Christoph Lange5, Terri H Beaty8, Michael H Cho2,7, Edwin K Silverman2,7.   

Abstract

Chronic obstructive pulmonary disease (COPD) is a common and progressive disease that is influenced by both genetic and environmental factors. For many years, knowledge of the genetic basis of COPD was limited to Mendelian syndromes, such as alpha-1 antitrypsin deficiency and cutis laxa, caused by rare genetic variants. Over the past decade, the proliferation of genome-wide association studies, the accessibility of whole-genome sequencing, and the development of novel methods for analyzing genetic variation data have led to a substantial increase in the understanding of genetic variants that play a role in COPD susceptibility and COPD-related phenotypes. COPDGene (Genetic Epidemiology of COPD), a multicenter, longitudinal study of over 10,000 current and former cigarette smokers, has been pivotal to these breakthroughs in understanding the genetic basis of COPD. To date, over 20 genetic loci have been convincingly associated with COPD affection status, with additional loci demonstrating association with COPD-related phenotypes such as emphysema, chronic bronchitis, and hypoxemia. In this review, we discuss the contributions of the COPDGene study to the discovery of these genetic associations as well as the ongoing genetic investigations of COPD subtypes, protein biomarkers, and post-genome-wide association study analysis.

Entities:  

Keywords:  chronic obstructive pulmonary disease; epidemiology; genetics

Mesh:

Substances:

Year:  2019        PMID: 30908940      PMCID: PMC6775891          DOI: 10.1164/rccm.201808-1455SO

Source DB:  PubMed          Journal:  Am J Respir Crit Care Med        ISSN: 1073-449X            Impact factor:   21.405


  82 in total

1.  On the association analysis of genome-sequencing data: A spatial clustering approach for partitioning the entire genome into nonoverlapping windows.

Authors:  Heide Loehlein Fier; Dmitry Prokopenko; Julian Hecker; Michael H Cho; Edwin K Silverman; Scott T Weiss; Rudolph E Tanzi; Christoph Lange
Journal:  Genet Epidemiol       Date:  2017-03-20       Impact factor: 2.135

2.  Genetic influences on smoking and clinical disease. Understanding behavioral and biological pathways with mediation analysis.

Authors:  Sharon M Lutz; John E Hokanson
Journal:  Ann Am Thorac Soc       Date:  2014-09

3.  Persistent and Newly Developed Chronic Bronchitis Are Associated with Worse Outcomes in Chronic Obstructive Pulmonary Disease.

Authors:  Victor Kim; Huaqing Zhao; Aladin M Boriek; Antonio Anzueto; Xavier Soler; Surya P Bhatt; Stephen I Rennard; Robert Wise; Alejandro Comellas; Joe W Ramsdell; Gregory L Kinney; MeiLan K Han; Carlos H Martinez; Andrew Yen; Jennifer Black-Shinn; Janos Porszasz; Gerard J Criner; Nicola A Hanania; Amir Sharafkhaneh; James D Crapo; Barry J Make; Edwin K Silverman; Jeffrey L Curtis
Journal:  Ann Am Thorac Soc       Date:  2016-07

4.  A general approach to testing for pleiotropy with rare and common variants.

Authors:  Sharon M Lutz; Tasha E Fingerlin; John E Hokanson; Christoph Lange
Journal:  Genet Epidemiol       Date:  2016-11-30       Impact factor: 2.135

5.  Genetic Association and Risk Scores in a Chronic Obstructive Pulmonary Disease Meta-analysis of 16,707 Subjects.

Authors:  Robert Busch; Brian D Hobbs; Jin Zhou; Peter J Castaldi; Michael J McGeachie; Megan E Hardin; Iwona Hawrylkiewicz; Pawel Sliwinski; Jae-Joon Yim; Woo Jin Kim; Deog K Kim; Alvar Agusti; Barry J Make; James D Crapo; Peter M Calverley; Claudio F Donner; David A Lomas; Emiel F Wouters; Jørgen Vestbo; Ruth Tal-Singer; Per Bakke; Amund Gulsvik; Augusto A Litonjua; David Sparrow; Peter D Paré; Robert D Levy; Stephen I Rennard; Terri H Beaty; John Hokanson; Edwin K Silverman; Michael H Cho
Journal:  Am J Respir Cell Mol Biol       Date:  2017-07       Impact factor: 6.914

6.  Generative Method to Discover Genetically Driven Image Biomarkers.

Authors:  Nematollah K Batmanghelich; Ardavan Saeedi; Michael Cho; Raul San Jose Estepar; Polina Golland
Journal:  Inf Process Med Imaging       Date:  2015

7.  Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice.

Authors:  Suzanne M Cloonan; Kimberly Glass; Maria E Laucho-Contreras; Abhiram R Bhashyam; Morgan Cervo; Maria A Pabón; Csaba Konrad; Francesca Polverino; Ilias I Siempos; Elizabeth Perez; Kenji Mizumura; Manik C Ghosh; Harikrishnan Parameswaran; Niamh C Williams; Kristen T Rooney; Zhi-Hua Chen; Monica P Goldklang; Guo-Cheng Yuan; Stephen C Moore; Dawn L Demeo; Tracey A Rouault; Jeanine M D'Armiento; Eric A Schon; Giovanni Manfredi; John Quackenbush; Ashfaq Mahmood; Edwin K Silverman; Caroline A Owen; Augustine M K Choi
Journal:  Nat Med       Date:  2016-01-11       Impact factor: 53.440

8.  Common variants at five new loci associated with early-onset inflammatory bowel disease.

Authors:  Marcin Imielinski; Robert N Baldassano; Anne Griffiths; Richard K Russell; Vito Annese; Marla Dubinsky; Subra Kugathasan; Jonathan P Bradfield; Thomas D Walters; Patrick Sleiman; Cecilia E Kim; Aleixo Muise; Kai Wang; Joseph T Glessner; Shehzad Saeed; Haitao Zhang; Edward C Frackelton; Cuiping Hou; James H Flory; George Otieno; Rosetta M Chiavacci; Robert Grundmeier; Massimo Castro; Anna Latiano; Bruno Dallapiccola; Joanne Stempak; Debra J Abrams; Kent Taylor; Dermot McGovern; Gary Silber; Iwona Wrobel; Antonio Quiros; Jeffrey C Barrett; Sarah Hansoul; Dan L Nicolae; Judy H Cho; Richard H Duerr; John D Rioux; Steven R Brant; Mark S Silverberg; Kent D Taylor; M Michael Barmuda; Alain Bitton; Themistocles Dassopoulos; Lisa Wu Datta; Todd Green; Anne M Griffiths; Emily O Kistner; Michael T Murtha; Miguel D Regueiro; Jerome I Rotter; L Philip Schumm; A Hillary Steinhart; Stephen R Targan; Ramnik J Xavier; Cécile Libioulle; Cynthia Sandor; Mark Lathrop; Jacques Belaiche; Olivier Dewit; Ivo Gut; Simon Heath; Debby Laukens; Myriam Mni; Paul Rutgeerts; André Van Gossum; Diana Zelenika; Denis Franchimont; J P Hugot; Martine de Vos; Severine Vermeire; Edouard Louis; Lon R Cardon; Carl A Anderson; Hazel Drummond; Elaine Nimmo; Tariq Ahmad; Natalie J Prescott; Clive M Onnie; Sheila A Fisher; Jonathan Marchini; Jilur Ghori; Suzannah Bumpstead; Rhian Gwillam; Mark Tremelling; Panos Delukas; John Mansfield; Derek Jewell; Jack Satsangi; Christopher G Mathew; Miles Parkes; Michel Georges; Mark J Daly; Melvin B Heyman; George D Ferry; Barbara Kirschner; Jessica Lee; Jonah Essers; Richard Grand; Michael Stephens; Arie Levine; David Piccoli; John Van Limbergen; Salvatore Cucchiara; Dimitri S Monos; Stephen L Guthery; Lee Denson; David C Wilson; Straun F A Grant; Mark Daly; Mark S Silverberg; Jack Satsangi; Hakon Hakonarson
Journal:  Nat Genet       Date:  2009-11-15       Impact factor: 38.330

9.  Epidemiology, genetics, and subtyping of preserved ratio impaired spirometry (PRISm) in COPDGene.

Authors:  Emily S Wan; Peter J Castaldi; Michael H Cho; John E Hokanson; Elizabeth A Regan; Barry J Make; Terri H Beaty; MeiLan K Han; Jeffrey L Curtis; Douglas Curran-Everett; David A Lynch; Dawn L DeMeo; James D Crapo; Edwin K Silverman
Journal:  Respir Res       Date:  2014-08-06

10.  A genome-wide analysis of the response to inhaled β2-agonists in chronic obstructive pulmonary disease.

Authors:  M Hardin; M H Cho; M-L McDonald; E Wan; D A Lomas; H O Coxson; W MacNee; J Vestbo; J C Yates; A Agusti; P M A Calverley; B Celli; C Crim; S Rennard; E Wouters; P Bakke; S P Bhatt; V Kim; J Ramsdell; E A Regan; B J Make; J E Hokanson; J D Crapo; T H Beaty; C P Hersh
Journal:  Pharmacogenomics J       Date:  2015-10-27       Impact factor: 3.550

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  20 in total

1.  Established Biomarkers of Chronic Obstructive Pulmonary Disease Reflect Skeletal Muscle Integrity's Response to Exercise in an Animal Model of Pulmonary Emphysema.

Authors:  Joseph Balnis; Catherine E Vincent; Alyssa J Jones; Lisa A Drake; Joshua J Coon; Chun Geun Lee; Jack A Elias; Harold A Singer; Ariel Jaitovich
Journal:  Am J Respir Cell Mol Biol       Date:  2020-08       Impact factor: 6.914

Review 2.  Long Noncoding Transcriptome in Chronic Obstructive Pulmonary Disease.

Authors:  Dinesh Devadoss; Christopher Long; Raymond J Langley; Marko Manevski; Madhavan Nair; Michael A Campos; Glen Borchert; Irfan Rahman; Hitendra S Chand
Journal:  Am J Respir Cell Mol Biol       Date:  2019-12       Impact factor: 6.914

Review 3.  Fifty Years of Progress in the Epidemiology of Chronic Obstructive Pulmonary Disease: A Review of National Heart, Lung, and Blood Institute-Sponsored Studies.

Authors:  David M Mannino
Journal:  Chronic Obstr Pulm Dis       Date:  2019-10-23

Review 4.  Machine Learning Characterization of COPD Subtypes: Insights From the COPDGene Study.

Authors:  Peter J Castaldi; Adel Boueiz; Jeong Yun; Raul San Jose Estepar; James C Ross; George Washko; Michael H Cho; Craig P Hersh; Gregory L Kinney; Kendra A Young; Elizabeth A Regan; David A Lynch; Gerald J Criner; Jennifer G Dy; Stephen I Rennard; Richard Casaburi; Barry J Make; James Crapo; Edwin K Silverman; John E Hokanson
Journal:  Chest       Date:  2019-12-28       Impact factor: 9.410

5.  An Augmented High-Dimensional Graphical Lasso Method to Incorporate Prior Biological Knowledge for Global Network Learning.

Authors:  Yonghua Zhuang; Fuyong Xing; Debashis Ghosh; Farnoush Banaei-Kashani; Russell P Bowler; Katerina Kechris
Journal:  Front Genet       Date:  2022-01-27       Impact factor: 4.599

6.  10-Year Follow-Up of Lung Function, Respiratory Symptoms, and Functional Capacity in the COPDGene Study.

Authors:  Margaret F Ragland; Matthew Strand; David Baraghoshi; Kendra A Young; Gregory L Kinney; Erin Austin; John E Hokanson; Elizabeth Regan; James Crapo; Edwin K Silverman; Barry Make
Journal:  Ann Am Thorac Soc       Date:  2022-03

7.  Differential lung inflammation and injury with tobacco smoke exposure in Wistar Kyoto and spontaneously hypertensive rats.

Authors:  Alexa K Pham; Ching-Wen Wu; Xing Qiu; Jingyi Xu; Suzette Smiley-Jewell; Dale Uyeminami; Priya Upadhyay; Dewei Zhao; Kent E Pinkerton
Journal:  Inhal Toxicol       Date:  2020-08-11       Impact factor: 2.724

8.  Chronic cigarette smoke exposure and pneumococcal infection induce oropharyngeal microbiota dysbiosis and contribute to long-lasting lung damage in mice.

Authors:  Markus Hilty; Tsering M Wüthrich; Aurélie Godel; Roberto Adelfio; Susanne Aebi; Sabrina S Burgener; Brunhilde Illgen-Wilcke; Charaf Benarafa
Journal:  Microb Genom       Date:  2020-12-09

9.  LINC01414/LINC00824 genetic polymorphisms in association with the susceptibility of chronic obstructive pulmonary disease.

Authors:  Xiaoman Zhou; Yunjun Zhang; Yutian Zhang; Quanni Li; Mei Lin; Yixiu Yang; Yufei Xie; Yipeng Ding
Journal:  BMC Pulm Med       Date:  2021-07-07       Impact factor: 3.317

Review 10.  The Role of ABC Transporters in Lipid Metabolism and the Comorbid Course of Chronic Obstructive Pulmonary Disease and Atherosclerosis.

Authors:  Stanislav Kotlyarov; Anna Kotlyarova
Journal:  Int J Mol Sci       Date:  2021-06-23       Impact factor: 5.923

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