| Literature DB >> 30908787 |
Joanna P Simpson1, Martin Fascione1, Ed Bergström1,2, Julie Wilson1,3, Matthew J Collins4, Kirsty E H Penkman1, Jane Thomas-Oates1,2.
Abstract
RATIONALE: Although mass spectrometry (MS) is routinely used to determine deamination in peptide mixtures, the effects of the choice of ionisation source have not yet been investigated. In particular, matrix-assisted laser desorption/ionisation (MALDI) has become a popular tool with which to measure levels of glutamine deamidation in ancient proteins. Here we use model synthetic peptides to rigorously compare MALDI and electrospray ionisation (ESI).Entities:
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Year: 2019 PMID: 30908787 PMCID: PMC6594239 DOI: 10.1002/rcm.8441
Source DB: PubMed Journal: Rapid Commun Mass Spectrom ISSN: 0951-4198 Impact factor: 2.419
Figure 1The structures of product peptides Q and E. Product peptide Q (top) has the amino acid sequence YAYGOGQVG with a mass of 926 Da. Product peptide E has the amino acid sequence YAYGOGEVG and a mass of 927 Da [Color figure can be viewed at wileyonlinelibrary.com]
Corrected percentages of Q‐ and E‐containing peptides calculated using purity obtained from LC/MS analysis
| Theoretical % of Q | Theoretical % of E | Corrected % of Q taking into account peptide purity | Corrected % of E taking into account peptide purity |
|---|---|---|---|
| 0 | 100 | 3 | 97 |
| 10 | 90 | 12 | 88 |
| 30 | 70 | 31 | 69 |
| 50 | 50 | 50 | 50 |
| 70 | 30 | 69 | 31 |
| 90 | 10 | 87 | 13 |
| 100 | 0 | 96 | 4 |
Figure 2Plots showing measured percentage of product peptides Q and E, determined using MALDI (A and B) and ESI (C and D), against the known percentage. When using MALDI there is an underestimation of product peptide E [Color figure can be viewed at wileyonlinelibrary.com]
Figure 3Ratios of Q‐ and E‐containing peptides, obtained using MALDI‐TOF‐MS (B). Due to an overestimation of the Q‐containing peptide a curvilinear relationship is observed. The same samples were analysed using a higher resolution FT‐ICR mass spectrometer (A), with the data showing a similar relationship [Color figure can be viewed at wileyonlinelibrary.com]
Figure 4Measured percentage of Q in product peptide mixtures at three concentrations (2.5, 5 and 10 ppm). The data was obtained using either ESI‐FT‐ICR‐MS (A) or MALDI‐FT‐ICR‐MS (B) [Color figure can be viewed at wileyonlinelibrary.com]
Figure 5Measured percentage of Q in product peptide mixtures at three concentrations: (A) 2.5 ppm, (B) 5 ppm, and (C) 10 ppm analysed using three laser power percentages (35, 30 and 25%) [Color figure can be viewed at wileyonlinelibrary.com]
Measured percentages of Q in peptide mixtures spiked into tryptic protein digests (BSA, CytC and collagen) analysed using either ESI or MALDI
| Biological matrix | [peptide spike] (ppm) | Known % Q | ESI | MALDI | ||
|---|---|---|---|---|---|---|
| Measured % Q | SD | Measured % Q | SD | |||
| BSA | 5 | 31 | 34 | 2.98 | 58 | 2.21 |
| BSA | 10 | 31 | 34 | 1.63 | 60 | 0.83 |
| BSA | 5 | 50 | 64 | 3.63 | 74 | 0.42 |
| BSA | 10 | 50 | 56 | 0.59 | 74 | 0.42 |
| BSA | 5 | 69 | 85 | 1.41 | 85 | 1.28 |
| BSA | 10 | 69 | 77 | 1.65 | 87 | 0.73 |
| CytC | 5 | 31 | 29 | 0.29 | 56 | 3.00 |
| CytC | 10 | 31 | 31 | 3.78 | 61 | 0.46 |
| CytC | 5 | 50 | 47 | 2.21 | 57 | 1.13 |
| CytC | 10 | 50 | 45 | 0.56 | 61 | 0.46 |
| CytC | 5 | 69 | 65 | 0.61 | 88 | 0.63 |
| CytC | 10 | 69 | 65 | 2.27 | 88 | 0.29 |
| Collagen | 2.5 | 31 | 34 | 0.69 | 61 | 1.6 |
| Collagen | 5 | 31 | 32 | 1.26 | 61 | 3.04 |
| Collagen | 2.5 | 50 | 52 | 1.25 | 74 | 1.67 |
| Collagen | 5 | 50 | 52 | 1.03 | 75 | 0.91 |
| Collagen | 2.5 | 69 | 73 | 1.08 | 86 | 0.85 |
| Collagen | 5 | 69 | 70 | 0.38 | 86 | 0.48 |
SD: standard deviation