Literature DB >> 30908238

An Artificial Tissue Homeostasis Circuit Designed via Analog Circuit Techniques.

Jonathan J Y Teo, Ron Weiss, Rahul Sarpeshkar.   

Abstract

Tissue homeostasis (feedback control) is an important mechanism that regulates the population of different cell types within a tissue. In type-1 diabetes, auto-immune attack and consequent death of pancreatic β cells result in the failure of homeostasis and loss of organ function. Synthetically engineered adult stem cells with homeostatic control based on digital logic have been proposed as a solution for regenerating β cells. Such previously proposed homeostatic control circuits have thus far been unable to reliably control both stem-cell proliferation and stem-cell differentiation. Using analog circuits and feedback systems analysis, we have designed an in silico circuit that performs homeostatic control by utilizing a novel scheme with both symmetric and asymmetric division of stem cells. The use of a variety of feedback systems analysis techniques, which is common in analog circuit design, including root-locus techniques, Bode plots of feedback-loop frequency response, compensation techniques for improving stability, and robustness analysis help us choose design parameters to meet desirable specifications. For example, we show that lead compensation in analog circuits instantiated as an incoherent feed-forward loop in the biological circuit improves stability, whereas simultaneously reducing steady-state tracking error. Our symmetric and asymmetric division scheme also improves phase margin in the feedback loop, and thus improves robustness. This paper could be useful in porting an analog-circuit design framework to synthetic biological applications of the future.

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Year:  2019        PMID: 30908238      PMCID: PMC6835118          DOI: 10.1109/TBCAS.2019.2907074

Source DB:  PubMed          Journal:  IEEE Trans Biomed Circuits Syst        ISSN: 1932-4545            Impact factor:   3.833


  33 in total

1.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

Review 2.  Synthetic Biology: A Unifying View and Review Using Analog Circuits.

Authors:  Jonathan J Y Teo; Sung Sik Woo; Rahul Sarpeshkar
Journal:  IEEE Trans Biomed Circuits Syst       Date:  2015-09-11       Impact factor: 3.833

Review 3.  Cell cycle control of mammalian neural stem cells: putting a speed limit on G1.

Authors:  Paolo Salomoni; Federico Calegari
Journal:  Trends Cell Biol       Date:  2010-02-12       Impact factor: 20.808

4.  Stem cell regulation: Implications when differentiated cells regulate symmetric stem cell division.

Authors:  Marte Rørvik Høyem; Frode Måløy; Per Jakobsen; Bjørn Olav Brandsdal
Journal:  J Theor Biol       Date:  2015-05-19       Impact factor: 2.691

5.  Reversal of diabetes with insulin-producing cells derived in vitro from human pluripotent stem cells.

Authors:  Alireza Rezania; Jennifer E Bruin; Payal Arora; Allison Rubin; Irina Batushansky; Ali Asadi; Shannon O'Dwyer; Nina Quiskamp; Majid Mojibian; Tobias Albrecht; Yu Hsuan Carol Yang; James D Johnson; Timothy J Kieffer
Journal:  Nat Biotechnol       Date:  2014-09-11       Impact factor: 54.908

Review 6.  Maintaining tissue homeostasis: dynamic control of somatic stem cell activity.

Authors:  Benoit Biteau; Christine E Hochmuth; Heinrich Jasper
Journal:  Cell Stem Cell       Date:  2011-11-04       Impact factor: 24.633

Review 7.  Pathophysiology of duchenne muscular dystrophy: current hypotheses.

Authors:  Nicolas Deconinck; Bernard Dan
Journal:  Pediatr Neurol       Date:  2007-01       Impact factor: 3.372

Review 8.  Autologous umbilical cord blood infusion for type 1 diabetes.

Authors:  Michael J Haller; Hilla-Lee Viener; Clive Wasserfall; Todd Brusko; Mark A Atkinson; Desmond A Schatz
Journal:  Exp Hematol       Date:  2008-03-20       Impact factor: 3.084

9.  Generation of functional human pancreatic β cells in vitro.

Authors:  Felicia W Pagliuca; Jeffrey R Millman; Mads Gürtler; Michael Segel; Alana Van Dervort; Jennifer Hyoje Ryu; Quinn P Peterson; Dale Greiner; Douglas A Melton
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582

10.  Microencapsulated islets as bioartificial endocrine pancreas.

Authors:  F Lim; A M Sun
Journal:  Science       Date:  1980-11-21       Impact factor: 47.728

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  1 in total

1.  Rapid modeling of experimental molecular kinetics with simple electronic circuits instead of with complex differential equations.

Authors:  Yijie Deng; Douglas Raymond Beahm; Xinping Ran; Tanner G Riley; Rahul Sarpeshkar
Journal:  Front Bioeng Biotechnol       Date:  2022-09-28
  1 in total

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