Literature DB >> 30901260

An NMR View of Protein Dynamics in Health and Disease.

Ashok Sekhar1, Lewis E Kay2,3.   

Abstract

Biological molecules are often highly dynamic, and this flexibility can be critical for function. The large range of sampled timescales and the fact that many of the conformers that are continually explored are only transiently formed and sparsely populated challenge current biophysical approaches. Solution nuclear magnetic resonance (NMR) spectroscopy has emerged as a powerful method for characterizing biomolecular dynamics in detail, even in cases where excursions involve short-lived states. Here, we briefly review a number of NMR experiments for studies of biomolecular dynamics on the microsecond-to-second timescale and focus on applications to protein and nucleic acid systems that clearly illustrate the functional relevance of motion in both health and disease.

Keywords:  NMR spin relaxation; conformationally excited states; dynamics direct molecular function and misfunction; functional biomolecular dynamics

Mesh:

Substances:

Year:  2019        PMID: 30901260     DOI: 10.1146/annurev-biophys-052118-115647

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  32 in total

1.  Mapping invisible epitopes by NMR spectroscopy.

Authors:  Emery T Usher; Scott A Showalter
Journal:  J Biol Chem       Date:  2020-12-18       Impact factor: 5.157

Review 2.  Successes and challenges in simulating the folding of large proteins.

Authors:  Anne Gershenson; Shachi Gosavi; Pietro Faccioli; Patrick L Wintrode
Journal:  J Biol Chem       Date:  2019-11-11       Impact factor: 5.157

3.  Revisiting 1HN CPMG relaxation dispersion experiments: a simple modification can eliminate large artifacts.

Authors:  Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2019-10-23       Impact factor: 2.835

4.  Probing excited conformational states of nucleic acids by nitrogen CEST NMR spectroscopy.

Authors:  Bo Zhao; Jared T Baisden; Qi Zhang
Journal:  J Magn Reson       Date:  2019-11-11       Impact factor: 2.229

5.  Adjacent mutations in the archaeal Rad50 ABC ATPase D-loop disrupt allosteric regulation of ATP hydrolysis through different mechanisms.

Authors:  Zachary K Boswell; Marella D Canny; Tanner A Buschmann; Julie Sang; Michael P Latham
Journal:  Nucleic Acids Res       Date:  2020-03-18       Impact factor: 16.971

6.  Insights into Structural and Dynamical Changes Experienced by Human RNase 6 upon Ligand Binding.

Authors:  Chitra Narayanan; David N Bernard; Myriam Létourneau; Jacinthe Gagnon; Donald Gagné; Khushboo Bafna; Charles Calmettes; Jean-François Couture; Pratul K Agarwal; Nicolas Doucet
Journal:  Biochemistry       Date:  2020-01-24       Impact factor: 3.162

Review 7.  Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy.

Authors:  Ajith Kumar; Vaishali Narayanan; Ashok Sekhar
Journal:  Biochemistry       Date:  2019-11-04       Impact factor: 3.162

Review 8.  FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.

Authors:  Eitan Lerner; Anders Barth; Jelle Hendrix; Benjamin Ambrose; Victoria Birkedal; Scott C Blanchard; Richard Börner; Hoi Sung Chung; Thorben Cordes; Timothy D Craggs; Ashok A Deniz; Jiajie Diao; Jingyi Fei; Ruben L Gonzalez; Irina V Gopich; Taekjip Ha; Christian A Hanke; Gilad Haran; Nikos S Hatzakis; Sungchul Hohng; Seok-Cheol Hong; Thorsten Hugel; Antonino Ingargiola; Chirlmin Joo; Achillefs N Kapanidis; Harold D Kim; Ted Laurence; Nam Ki Lee; Tae-Hee Lee; Edward A Lemke; Emmanuel Margeat; Jens Michaelis; Xavier Michalet; Sua Myong; Daniel Nettels; Thomas-Otavio Peulen; Evelyn Ploetz; Yair Razvag; Nicole C Robb; Benjamin Schuler; Hamid Soleimaninejad; Chun Tang; Reza Vafabakhsh; Don C Lamb; Claus Am Seidel; Shimon Weiss
Journal:  Elife       Date:  2021-03-29       Impact factor: 8.140

Review 9.  Chemical Properties Determine Solubility and Stability in βγ-Crystallins of the Eye Lens.

Authors:  Megan A Rocha; Marc A Sprague-Piercy; Ashley O Kwok; Kyle W Roskamp; Rachel W Martin
Journal:  Chembiochem       Date:  2021-02-10       Impact factor: 3.164

10.  High-pressure NMR measurements provide insights into the different structural states that proteins can adopt.

Authors:  Remco Sprangers
Journal:  Biophys J       Date:  2021-01-22       Impact factor: 4.033

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