| Literature DB >> 30895748 |
Jiamin Wu1, Wenjie Zhang2, Junhong Cai3, Sizhe Huang4, Fanglin Niu1, Ying Zhang3, Shan Bao4, Tianbo Jin1,5.
Abstract
BACKGROUND: Recently, many studies have identified that genetic factor plays a crucial role in endometrial cancer development. The purpose of this study is to investigate the influence of single nucleotide polymorphisms (SNPs) of IL-1R2 on endometrial cancer susceptibility.Entities:
Keywords: zzm321990IL-1R2zzm321990; endometrial cancer; polymorphisms; susceptibility
Mesh:
Substances:
Year: 2019 PMID: 30895748 PMCID: PMC6503006 DOI: 10.1002/mgg3.650
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Alleles distribution of IL‐1R2 polymorphisms and association with endometrial cancer risk
| SNP‐ID | Chr | Position | Alleles A/B | MAF | HWE‐ | OR (95%CI) |
| |
|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||
| rs11674595 | 2 | 101994530 | C/T | 0.222 | 0.222 | 0.718 | 1.00 (0.78–1.27) | 0.978 |
| rs4851527 | 2 | 102005914 | A/G | 0.265 | 0.307 | 0.284 | 0.81 (0.65–1.01) | 0.063 |
| rs719250 | 2 | 102007256 | A/G | 0.319 | 0.301 | 0.201 | 1.09 (0.88–1.35) | 0.448 |
| rs3218896 | 2 | 102015190 | C/T | 0.166 | 0.136 | 0.596 | 1.27 (0.96–1.67) | 0.091 |
| rs3218977 | 2 | 102024739 | A/G | 0.249 | 0.225 | 0.095 | 1.15 (0.91–1.45) | 0.252 |
| rs2072472 | 2 | 102026557 | C/T | 0.240 | 0.216 | 0.326 | 1.15 (0.90–1.45) | 0.260 |
95% CI: 95% Confidence interval; A: Minor allele; B: Major allele; Chr: chromosome; HWE: Hardy Weinberg equilibrium; MAF: Minor allele frequency; OR: Odds ratio; SNP: Single nucleotide polymorphism.
p values were calculated from χ 2 test ( two sided).
p < 0.05 was considered statistically significant.
Genetic model analyses of the association between IL‐1R2 polymorphisms and endometrial cancer risk
| SNP–ID | Model | Genotype | Case | Control | Without adjust OR (95%CI) |
| Adjust OR (95%CI) |
|
|---|---|---|---|---|---|---|---|---|
| rs11674595 | Codominant | TT | 182 | 350 | 1.00 | 1.00 | ||
| CT | 89 | 196 | 0.87 (0.64–1.19) | 0.388 | 0.90 (0.65–1.24) | 0.515 | ||
| CC | 20 | 30 | 1.28 (0.71–2.32) | 0.412 | 1.21 (0.65–2.25) | 0.548 | ||
| Dominant | TT | 182 | 350 | 1.00 | 1.00 | |||
| CC + CT | 109 | 226 | 0.93 (0.69–1.24) | 0.612 | 0.94 (0.70–1.27) | 0.699 | ||
| Recessive | TT + CT | 271 | 546 | 1.00 | 1.00 | |||
| CC | 20 | 30 | 1.34 (0.75–2.41) | 0.322 | 1.25 (0.68–2.31) | 0.468 | ||
| Additive | – | – | – | 1.00 (0.79–1.26) | 0.979 | 1.00 (0.78–1.27) | 0.977 | |
| rs4851527 | Codominant | GG | 163 | 272 | 1.00 | 1.00 | ||
| AG | 105 | 258 | 0.68 (0.50–0.92) | 0.011 | 0.71 (0.52–0.96) | 0.028 | ||
| AA | 25 | 49 | 0.85 (0.51–1.43) | 0.544 | 0.74 (0.43–1.28) | 0.280 | ||
| Dominant | GG | 163 | 272 | 1.00 | 1.00 | |||
| AA + AG | 130 | 307 | 0.71 (0.53–0.94) | 0.016 | 0.71 (0.53–0.96) | 0.024 | ||
| Recessive | GG + AG | 268 | 530 | 1.00 | 1.00 | |||
| AA | 25 | 49 | 1.01 (0.61–1.67) | 0.972 | 0.86 (0.51–1.46) | 0.580 | ||
| Additive | – | – | – | 0.81 (0.65–1.01) | 0.063 | 0.79 (0.63–1.00) | 0.047 | |
| rs719250 | Codominant | GG | 137 | 289 | 1.00 | 1.00 | ||
| AG | 125 | 231 | 1.14 (0.85–1.54) | 0.384 | 1.25 (0.92–1.71) | 0.152 | ||
| AA | 31 | 59 | 1.11 (0.69–1.79) | 0.674 | 1.20 (0.73–1.97) | 0.470 | ||
| Dominant | GG | 137 | 289 | 1.00 | 1.00 | |||
| AA + AG | 156 | 290 | 1.14 (0.86–1.50) | 0.379 | 1.24 (0.93–1.67) | 0.145 | ||
| Recessive | GG + AG | 262 | 520 | 1.00 | 1.00 | |||
| AA | 31 | 59 | 1.04 (0.66–1.65) | 0.858 | 1.08 (0.67–1.74) | 0.745 | ||
| Additive | – | – | – | 1.08 (0.88–1.34) | 0.458 | 1.15 (0.92–1.43) | 0.215 | |
| rs3218896 | Codominant | TT | 203 | 433 | 1.00 | 1.00 | ||
| CT | 81 | 133 | 1.30 (0.94–1.79) | 0.112 | 1.41 (1.00–1.97) | 0.048 | ||
| CC | 8 | 12 | 1.42 (0.57–3.53) | 0.448 | 1.50 (0.58–3.85) | 0.401 | ||
| Dominant | TT | 203 | 433 | 1.00 | 1.00 | |||
| CC + CT | 89 | 145 | 1.31 (0.96–1.79) | 0.091 | 1.41 (1.02–1.96) | 0.037 | ||
| Recessive | TT + CT | 284 | 566 | 1.00 | 1.00 | |||
| CC | 8 | 12 | 1.33 (0.54–3.29) | 0.539 | 1.37 (0.54–3.51) | 0.509 | ||
| Additive | – | – | – | 1.26 (0.96–1.66) | 0.094 | 1.34 (1.01–1.79) | 0.043 | |
| rs3218977 | Codominant | GG | 163 | 341 | 1.00 | 1.00 | ||
| AG | 111 | 216 | 1.08 (0.80–1.44) | 0.631 | 1.05 (0.77–1.43) | 0.747 | ||
| AA | 17 | 22 | 1.62 (0.84–3.13) | 0.154 | 1.28 (0.65–2.54) | 0.475 | ||
| Dominant | GG | 163 | 341 | 1.00 | 1.00 | |||
| AA + AG | 128 | 238 | 1.13 (0.85–1.50) | 0.417 | 1.08 (0.80–1.44) | 0.628 | ||
| Recessive | GG + AG | 274 | 557 | 1.00 | 1.00 | |||
| AA | 17 | 22 | 1.57 (0.82–3.01) | 0.173 | 1.26 (0.64–2.46) | 0.505 | ||
| Additive | – | – | – | 1.16 (0.91–1.47) | 0.239 | 1.09 (0.85–1.39) | 0.515 | |
| rs2072472 | Codominant | TT | 174 | 360 | 1.00 | 1.00 | ||
| CT | 96 | 188 | 1.06 (0.78–1.43) | 0.724 | 1.09 (0.80–1.50) | 0.586 | ||
| CC | 22 | 31 | 1.47 (0.83–2.61) | 0.191 | 1.44 (0.79–2.64) | 0.232 | ||
| Dominant | TT | 174 | 360 | 1.00 | 1.00 | |||
| CC + CT | 118 | 219 | 1.12 (0.84–1.49) | 0.459 | 1.14 (0.85–1.54) | 0.382 | ||
| Recessive | TT + CT | 270 | 548 | 1.00 | 1.00 | |||
| CC | 22 | 31 | 1.44 (0.82–2.54) | 0.206 | 1.40 (0.77–2.53) | 0.265 | ||
| Additive | – | – | – | 1.14 (0.90–1.43) | 0.275 | 1.15 (0.91–1.46) | 0.254 |
95% CI: 95% Confidence interval; OR: Odds ratio; SNP: Single nucleotide polymorphism.
Adjust OR and 95% CI were calculated using a conditional logistic regression adjusted with age. p < 0.05 was considered statistically significant.
Figure 1Haplotype block map for the six SNPs in the IL‐1R2 gene. Pairwise linkage disequilibrium (LD) measures (D and r2) were shown by the LD map. Square background color represents the D’/LOD and the values in cells are r2 values (multiplied by 100). Bright red represents very strong LD; white represents no LD; pink represents intermediate LD
Association between haplotypes of IL‐1R2 and endometrial cancer risk
| SNP‐ID | Haplotype | FA | FU | OR (95%CI) |
| Adjust OR (95%CI) | Adjust |
|---|---|---|---|---|---|---|---|
| rs11674595|rs4851527|rs719250|rs3218896 | TGTC | 0.835 | 0.866 | 0.78 (0.59–1.03) | 0.080 | 0.73 (0.54–0.97) | 0.031 |
| rs11674595|rs4851527|rs719250|rs3218896 | TGTT | 0.848 | 0.837 | 1.09 (0.83–1.44) | 0.530 | 1.04 (0.78–1.38) | 0.778 |
| rs11674595|rs4851527|rs719250|rs3218896 | TACT | 0.266 | 0.309 | 0.81 (0.65–1.01) | 0.063 | 0.79 (0.63–1.00) | 0.049 |
| rs11674595|rs4851527|rs719250|rs3218896 | CGCT | 0.778 | 0.781 | 0.98 (0.78–1.24) | 0.879 | 0.98 (0.77–1.25) | 0.860 |
| rs11674595|rs4851527|rs719250|rs3218896 | TGCT | 0.807 | 0.829 | 0.86 (0.66–1.12) | 0.257 | 0.93 (0.71–1.21) | 0.577 |
| rs3218977|rs2072472 | AG | 0.759 | 0.784 | 0.87 (0.69–1.10) | 0.244 | 0.86 (0.68–1.10) | 0.227 |
| rs3218977|rs2072472 | GA | 0.75 | 0.776 | 0.86 (0.68–1.10) | 0.224 | 0.92 (0.71–1.17) | 0.487 |
| rs3218977|rs2072472 | AA | 0.509 | 0.56 | 0.81 (0.67–0.99) | 0.044 | 0.84 (0.68–1.04) | 0.105 |
95% CI: 95% Confidence interval; FA: Frequency in case; FU: Frequency in control; OR: Odds ratio.
OR and 95% CI were calculated using a conditional logistic regression.
p value < 0.05 indicates statistical significance.
Age stratification analysis of association between rs2072472 and endometrial cancer risk
| Model | Genotype | Age ≤54 years old | Age >54 years old | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Case | Control | OR (95%CI) |
| Case | Control | OR (95%CI) |
| ||
| Codominant | TT | 83 | 238 | 1.00 | 91 | 122 | 1.00 | ||
| CT | 43 | 133 | 0.94 (0.61–1.46) | 0.785 | 53 | 55 | 1.30 (0.82–2.08) | 0.268 | |
| CC | 14 | 18 | 2.28 (1.04–5.00) | 0.040 | 8 | 13 | 0.77 (0.30–1.96) | 0.586 | |
| Dominant | TT | 83 | 238 | 1.00 | 91 | 122 | 1.00 | ||
| CC + CT | 57 | 151 | 1.10 (0.73–1.65) | 0.660 | 61 | 68 | 1.20 (0.77–1.86) | 0.422 | |
| Recessive | TT + CT | 126 | 371 | 1.00 | 144 | 177 | 1.00 | ||
| CC | 14 | 18 | 2.33 (1.08–5.03) | 0.032 | 8 | 13 | 0.71 (0.28–1.77) | 0.458 | |
| Additive | – | – | – | 1.22 (0.88–1.69) | 0.225 | – | – | 1.06 (0.75–1.51) | 0.729 |
95% CI: 95% Confidence interval; OR: Odds ratio.
p < 0.05 was considered statistically significant.