| Literature DB >> 30895006 |
Yu-Feng Hsiao1, Li-Chiu Yang2, Yu-Shian Chou3, Ya-Ping Ho3,4, Ying-Chu Lin4, Kun-Yen Ho3,4, Yi-Min Wu3,4, Chi-Cheng Tsai2.
Abstract
BACKGROUND/Entities:
Keywords: MMP-2; MMP-9; TIMP-2; Taiwanese; gene polymorphism; periodontitis
Year: 2016 PMID: 30895006 PMCID: PMC6395246 DOI: 10.1016/j.jds.2016.07.001
Source DB: PubMed Journal: J Dent Sci ISSN: 1991-7902 Impact factor: 2.080
PCR conditions for MMP-2, MMP-9, and TIMP-2 restriction fragment length polymorphisms.
| Gene | Primes | Restriction enzyme | |
|---|---|---|---|
| 5′-CTTCCTAGGCTGGTCCTTACTGA-3′ (forward) | 188 + 162 + 26 bp (CT); 188 bp (CC) | ||
| 5′-CTGAGACCTGAAGAGCTAAAGACCT-3′ (reverse) | 162 + 26 bp (TT) | ||
| (95°C, 10 min, 35 cycles then 95°C, 45 s then 55°C, 45 s; 72°C, 45 s) | |||
| 5′-GGGTCTTTTGTGACCTCGATC-3′ (forward) | 118 + 99 + 19 bp (TG); 118 bp (TT) | ||
| 5′-GGTAAAATGAGGCTGAGACCTG-3′ (reverse) | 99 + 19 bp (GG) | ||
| (95°C, 10 min, 40 cycles then 95°C, 45 s then 55°C 45 s, 72°C, 45 s) | |||
| 5′-ATAGGGTAAACCTCCCCACATT-3′ (forward) | 300 + 254 + 46 bp (CT); 300 bp (CC) | ||
| 5′-GGTAAAATGAGGCTGAGACCTG-3′ (reverse) | 254 + 46 bp (TT) | ||
| (95°C, 10 min, 40 cycles then 95°C, 45 s then 55°C 45 s, 72°C, 45 s) | |||
| 5′-CGTCTCTTGTTGGCTGGTCA-3′ (forward) | 230 + 51 +23 bp (GG); 230 + 51 bp (CC) | ||
| 5′-CCTTCAGCTCGACTCTGGAG-3′ (reversed) | 253 + 230 + 51 + 23 bp (CC) | ||
| (94°C, 4 min, 35 cycles then 94°C, 1 min, then 56°C 45 s, 72°C, 45 s) | |||
| 5′- GGGATAATTTGGCTCTGGTCTTCAA-3′ (forward) | 436 bp (CC); | ||
| 5′-CCATGGGAACCATAGAAAAGA-3′ (reversed) | 436 + 194 + 242 bp (CT) | ||
| 94°C, 10 min, 35 cycles then 95°C, 30 s, 59°C, 45 s, 72°C, 45 s | |||
MMP = matrix metalloproteinase; PCR = polymerase chain reaction; TIMP, tissue inhibitor of MMPs.
Demographic data of participants in healthy control (HC), aggressive periodontitis (AgP), and chronic periodontitis (CP) groups.
| HC | AgP | CP | χ2 | P | |
|---|---|---|---|---|---|
| Age (mean ± SD) | 45.5 ± 11.3 | 39.0 ± 10.1 | 50.8 ± 8.6 | 31.48 | 0.000 |
| Sex | |||||
| Male | 57 (48.7) | 41 (59.4) | 74 (57.4) | 2.68 | 0.260 |
| Female | 60 (51.3) | 28 (40.6) | 55 (42.6) | ||
| Habit | |||||
| BQ chewing | |||||
| Yes | 8 (6.8) | 10 (14.5) | 28 (21.7) | 10.88 | 0.004 |
| No | 109 (93.2) | 59 (85.5) | 101 (78.3) | ||
| Smoking | |||||
| Yes | 20 (17.1) | 26 (37.7) | 51 (39.5) | 16.47 | 0.000 |
| No | 97 (82.9) | 43 (62.3) | 78 (60.5) | ||
| Al drinking | |||||
| Yes | 30 (25.6) | 29 (42.0) | 65 (50.4) | 16.00 | 0.000 |
| No | 87 (74.4) | 40 (58.0) | 64 (49.6) | ||
Al drinking = alcohol drinking; BQ chewing = betel quid chewing; SD = standard deviation.
Association of MMP-2-1306, -790, and -735, MMP-9-1562 and TIMP2 418 genotypes, and allele with healthy control (HC), aggressive periodontitis (AgP), and chronic periodontitis (CP) groups.
| Genotype | HC | AgP | CP | χ2 | P |
|---|---|---|---|---|---|
| MMP-2-1306 | |||||
| CC | 105 (89.7) | 62 (89.9) | 114 (88.4) | 1.49 | 0.83 |
| CT | 12 (10.3) | 7 (10.1) | 14 (10.9) | ||
| TT | 0 (0.0) | 0 (0.0) | 1 (0.8) | ||
| C allele | 222 (94.9) | 131 (94.9) | 242 (93.8) | 0.35 | 0.84 |
| T allele | 12 (5.1) | 7 (5.1) | 16 (6.2) | ||
| MMP-2-735 | |||||
| CC | 57 (48.7) | 39 (56.5) | 75 (58.1) | 2.98 | 0.56 |
| CT | 48 (41.0) | 26 (37.7) | 44 (34.1) | ||
| TT | 12 (10.3) | 4 (5.8%) | 10 (7.8) | ||
| C allele | 162 (69.2) | 104 (75.4) | 194 (75.2) | 2.71 | 0.26 |
| T allele | 72 (30.8) | 34 (24.6) | 64 (24.8) | ||
| MMP-2-790 | |||||
| TT | 98 (83.8) | 52 (75.4) | 95 (73.6) | 5.80 | 0.21 |
| GT | 18 (15.4) | 17 (24.6) | 31 (24.0) | ||
| GG | 1 (0.9) | 0 (0.0) | 3 (2.3) | ||
| T allele | 214 (91.5) | 121 (87.7) | 219 (84.9) | 5.00 | 0.08 |
| G allele | 20 (8.5) | 17 (12.3) | 39 (15.1) | ||
| TIMP-2-418 | |||||
| GG | 73 (62.4) | 48 (69.6) | 94 (72.9) | 8.51 | 0.08 |
| GC | 44 (37.6) | 19 (27.5) | 31 (24.0) | ||
| CC | 0 (0.0) | 2 (2.9) | 4 (3.1) | ||
| G allele | 188 (81.7) | 114 (83.8) | 219 (84.9) | 0.89 | 0.64 |
| C allele | 42 (18.3) | 22 (16.2) | 39 (15.1) | ||
| MMP-9-1562 | |||||
| CC | 90 (76.9) | 48 (69.6) | 96 (74.4) | 1.48 | 0.83 |
| CT | 28 (21.4) | 19 (27.5) | 31 (24.0) | ||
| TT | 2 (1.7) | 2 (2.9) | 2 (1.6) | ||
| C allele | 205 (87.6) | 115 (83.3) | 223 (86.4) | 1.35 | 0.51 |
| T allele | 29 (12.4) | 23 (16.7) | 35 (13.6) | ||
MMP = matrix metalloproteinase; TIMP, tissue inhibitor of MMPs.
Genotypes and allele distributions in nonsmokers of healthy control (HC), aggressive periodontitis (AgP), and chronic periodontitis (CP) groups.
| Genotype | HC | AgP | CP | χ2 | P |
|---|---|---|---|---|---|
| MMP-2-1306 | |||||
| CC | 88 (90.7) | 40 (93.0) | 68 (87.2) | 2.535 | 0.64 |
| CT | 9 (9.3) | 3 (7.0) | 9 (11.5) | ||
| TT | 0 (0.0) | 0 (0.0) | 1 (1.3) | ||
| C allele | 185 (95.4) | 83 (96.5) | 145 (92.9) | 1.691 | 0.43 |
| T allele | 9 (4.6) | 3 (3.5) | 11 (7.1) | ||
| MMP-2-735 | |||||
| CC | 45 (46.4) | 24 (55.8) | 40 (51.3) | 2.117 | 0.71 |
| CT | 41 (42.3) | 17 (39.5) | 31 (39.7) | ||
| TT | 11 (11.3) | 2 (4.7) | 7 (9.0) | ||
| C allele | 131 (67.5) | 65 (75.6) | 111 (71.2) | 1.920 | 0.38 |
| T allele | 63 (32.5) | 21 (24.4) | 45 (28.8) | ||
| MMP-2-790 | |||||
| TT | 81 (83.5) | 33 (76.7) | 58 (74.4) | 5.258 | 0.26 |
| GT | 16 (16.5) | 10 (23.3) | 18 (23.1) | ||
| GG | 0 (0.0) | 0 (0.0) | 2 (2.5) | ||
| T allele | 178 (91.8) | 76 (88.4) | 134 (85.9) | 3.068 | 0.22 |
| G allele | 16 (8.2) | 10 (11.6) | 22 (14.1) | ||
| TIMP-2-418 | |||||
| GG | 60 (61.9) | 29 (67.4) | 61 (78.2) | 11.270 | 0.024 |
| GC | 37 (38.1) | 13 (30.2) | 14 (17.9) | ||
| CC | 0 (0.0) | 1 (2.4) | 3 (3.9) | ||
| G allele | 156 (81.3) | 70 (83.3) | 136 (87.2) | 2.245 | 0.33 |
| C allele | 36 (18.7) | 14 (16.7) | 20 (12.8) | ||
| MMP-9-1562 | |||||
| CC | 77 (79.4) | 32 (74.4) | 57 (73.1) | 4.967 | 0.29 |
| CT | 18 (18.6) | 9 (20.9) | 21 (26.9) | ||
| TT | 2 (2.0) | 2 (4.7) | 0 (0.0) | ||
| C allele | 172 (88.7) | 73 (84.9) | 135 (86.5) | 0.842 | 0.66 |
| T allele | 22 (11.3) | 13 (15.1) | 21 (13.5) | ||
MMP = matrix metalloproteinase; TIMP, tissue inhibitor of MMPs.
Logistic regression analysis of the associations of the genotypes and allele frequencies of MMP-2 -1306, -790, and -735, MMP-9 -1562, and TIMP-2 -418 genes, and chronic periodontitis (CP) risks.
| Genotype | HC | CP | Crude OR | Adjusted OR |
|---|---|---|---|---|
| MMP-2-1306 | ||||
| CT/TT | 12 (10.3) | 15 (11.6) | 1 | 1 |
| CC | 105 (89.7) | 114 (88.4) | 0.87 (0.39–1.94) | 0.94 (0.39–2.26) |
| T allele | 12 (5.1) | 16 (6.2) | 1 | 1 |
| C allele | 222 (94.9) | 242 (93.8) | 0.82 (0.38–1.77) | 0.87 (0.38–2.00) |
| MMP-2-735 | ||||
| TT | 12 (10.3) | 10 (7.8) | 1 | 1 |
| CT | 48 (41.0) | 44 (34.1) | 1.1 (0.43–2.80) | 1.18 (0.42–0.34) |
| CC | 57 (48.7) | 75 (58.1) | 1.58 (0.64–3.91) | 1.78 (0.64–4.93) |
| T allele | 72 (30.8) | 64 (24.8) | 1 | 1 |
| C allele | 162 (69.2) | 194 (75.2) | 1.35 (0.91–2.00) | 1.41 (0.91–2.18) |
| MMP-2-790 | ||||
| GT/GG | 19 (16.2) | 34 (26.4) | 1 | 1 |
| TT | 98 (83.8) | 95 (73.6) | 0.54 (0.29–1.02) | 0.50* (0.25–1.00) |
| G allele | 20 (8.5) | 39 (15.1) | 1 | 1 |
| T allele | 214 (91.5) | 219 (84.9) | 0.53* (0.30–0.93) | 0.52* (0.28–0.96) |
| TIMP-2-418 | ||||
| GC/CC | 44 (37.6) | 35 (27.1) | 1 | 1 |
| GG | 73 (62.4) | 94 (72.9) | 1.62 (0.94–2.78) | 1.46 (0.81–2.63) |
| G allele | 188 (81.7) | 219 (84.9) | 1 | 1 |
| C allele | 42 (18.3) | 39 (15.1) | 0.8 (0.50–1.29) | 0.9 (0.53–1.51) |
| MMP-9-1562 | ||||
| TT | 2 (1.7) | 2 (2.9) | 1 | 1 |
| CT | 28 (21.4) | 19 (27.5) | 1.24 (0.16–9.44) | 0.94 (0.11–7.91) |
| CC | 90 (76.9) | 48 (69.6) | 1.07 (0.15–7.73) | 0.99 (0.13–7.83) |
| T allele | 29 (12.4) | 35 (13.6) | 1 | 1 |
| C allele | 205 (87.6) | 223 (86.4) | 0.9 (0.53–1.53) | 1.04 (0.58–1.83) |
* P < 0.05.
HC = healthy control; MMP = matrix metalloproteinase; OR = odds ratio; TIMP, tissue inhibitor of MMPs.
Adjustment for age, sex, and habits of betel quid chewing, alcohol drinking, and smoking.
Associations of genotypes and allele frequencies of MMP-2 -1306, -790, and -735, MMP-9 -1562 and TIMP-2 -418 genes, and AgP risks in nonalcohol-drinking participants using logistic regression analysis.
| Genotype | HC | AgP | Crude OR | Adjusted OR |
|---|---|---|---|---|
| MMP-2-1306 | ||||
| CT/TT | 7 (8.0) | 3 (7.5) | 1.00 | 1.00 |
| CC | 80 (92.0) | 37 (92.5) | 1.08 (0.26–4.41) | 0.88 (0.19–3.98) |
| T allele | 7 (4.1) | 3 (3.7) | 1.00 | 1.00 |
| C allele | 165 (95.9) | 77 (96.3) | 1.08 (0.27–4.27) | 0.86 (0.20–3.72) |
| MMP-2-735 | ||||
| TT | 9 (10.4) | 2 (5.0) | 1.00 | 1.00 |
| CT | 31 (35.6) | 15 (37.5) | 2.18 (0.42–11.36) | 1.96 (0.34–11.30) |
| CC | 47 (54.0) | 23 (57.5) | 2.20 (0.44–11.03) | 2.06 (0.38–11.26) |
| T allele | 49 (28.5) | 19 (23.7) | 1.00 | 1.00 |
| C allele | 123 (71.5) | 61 (76.3) | 1.26 (0.68–2.32) | 1.26 (0.65–2.43) |
| MMP-2-790 | ||||
| GT/GG | 12 (13.8) | 9 (22.5) | 1.00 | 1.00 |
| TT | 75 (86.2) | 31 (77.5) | 0.55 (0.21–1.44) | 0.63 (0.23–1.75) |
| G allele | 13 (7.6) | 9 (11.2) | 1.00 | 1.00 |
| T allele | 159 (92.4) | 71 (88.8) | 0.64 (0.26–1.56) | 0.69 (0.27–1.79) |
| TIMP-2-418 | ||||
| GC/CC | 32 (36.8) | 11 (27.5) | 1.00 | 1.00 |
| GG | 55 (63.2) | 29 (72.5) | 1.53 (0.68–3.48) | 1.73 (0.71–4.22) |
| G allele | 140 (82.4) | 68 (85.0) | 1.00 | 1.00 |
| C allele | 30 (17.6) | 12 (15.0) | 0.80 (0.39–1.66) | 0.72 (0.33–1.56) |
| MMP-9-1562 | ||||
| CT/TT | 18 (20.7) | 14 (35.0) | 1.00 | 1.00 |
| CC | 69 (79.3) | 26 (65.0) | 0.48 (0.21–1.11) | 0.40 (0.16–1.02) |
| T allele | 19 (11.0) | 16 (20.0) | 1.00 | 1.00 |
| C allele | 153 (89.0) | 64 (80.0) | 0.49 (0.24–1.01) | 0.40* (0.18–0.90) |
* P < 0.05.
AgP = aggressive periodontitis group; CI = confidence interval; HC = healthy control group; MMP = matrix metalloproteinase; OR = odds ratio; TIMP, tissue inhibitor of MMPs.
Adjustment for age, sex, and habits of betel-quid chewing and smoking.