Literature DB >> 30889417

Chromatin's physical properties shape the nucleus and its functions.

Andrew D Stephens1, Edward J Banigan2, John F Marko3.   

Abstract

The cell nucleus encloses, organizes, and protects the genome. Chromatin maintains nuclear mechanical stability and shape in coordination with lamins and the cytoskeleton. Abnormal nuclear shape is a diagnostic marker for human diseases, and it can cause nuclear dysfunction. Chromatin mechanics underlies this link, as alterations to chromatin and its physical properties can disrupt or rescue nuclear shape. The cell can regulate nuclear shape through mechanotransduction pathways that sense and respond to extracellular cues, thus modulating chromatin compaction and rigidity. These findings reveal how chromatin's physical properties can regulate cellular function and drive abnormal nuclear morphology and dysfunction in disease.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 30889417      PMCID: PMC6692209          DOI: 10.1016/j.ceb.2019.02.006

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  109 in total

1.  The nuclear envelope lamina network has elasticity and a compressibility limit suggestive of a molecular shock absorber.

Authors:  Kris Noel Dahl; Samuel M Kahn; Katherine L Wilson; Dennis E Discher
Journal:  J Cell Sci       Date:  2004-08-25       Impact factor: 5.285

2.  ESCRT III repairs nuclear envelope ruptures during cell migration to limit DNA damage and cell death.

Authors:  M Raab; M Gentili; H de Belly; H R Thiam; P Vargas; A J Jimenez; F Lautenschlaeger; Raphaël Voituriez; A M Lennon-Duménil; N Manel; M Piel
Journal:  Science       Date:  2016-03-24       Impact factor: 47.728

3.  Nuclear envelope rupture and repair during cancer cell migration.

Authors:  Celine M Denais; Rachel M Gilbert; Philipp Isermann; Alexandra L McGregor; Mariska te Lindert; Bettina Weigelin; Patricia M Davidson; Peter Friedl; Katarina Wolf; Jan Lammerding
Journal:  Science       Date:  2016-03-24       Impact factor: 47.728

4.  Osmotic challenge drives rapid and reversible chromatin condensation in chondrocytes.

Authors:  Jerome Irianto; Joe Swift; Rui P Martins; Graham D McPhail; Martin M Knight; Dennis E Discher; David A Lee
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

5.  A progeria mutation reveals functions for lamin A in nuclear assembly, architecture, and chromosome organization.

Authors:  Pekka Taimen; Katrin Pfleghaar; Takeshi Shimi; Dorothee Möller; Kfir Ben-Harush; Michael R Erdos; Stephen A Adam; Harald Herrmann; Ohad Medalia; Francis S Collins; Anne E Goldman; Robert D Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

Review 6.  An Overview of Genome Organization and How We Got There: from FISH to Hi-C.

Authors:  James Fraser; Iain Williamson; Wendy A Bickmore; Josée Dostie
Journal:  Microbiol Mol Biol Rev       Date:  2015-09       Impact factor: 11.056

7.  Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks.

Authors:  Heiner Albiez; Marion Cremer; Cinzia Tiberi; Lorella Vecchio; Lothar Schermelleh; Sandra Dittrich; Katrin Küpper; Boris Joffe; Tobias Thormeyer; Johann von Hase; Siwei Yang; Karl Rohr; Heinrich Leonhardt; Irina Solovei; Christoph Cremer; Stanislav Fakan; Thomas Cremer
Journal:  Chromosome Res       Date:  2006-11-22       Impact factor: 4.620

8.  Extracellular Forces Cause the Nucleus to Deform in a Highly Controlled Anisotropic Manner.

Authors:  Kristina Haase; Joan K L Macadangdang; Claire H Edrington; Charles M Cuerrier; Sebastian Hadjiantoniou; James L Harden; Ilona S Skerjanc; Andrew E Pelling
Journal:  Sci Rep       Date:  2016-02-19       Impact factor: 4.379

9.  p63 Transcription Factor Regulates Nuclear Shape and Expression of Nuclear Envelope-Associated Genes in Epidermal Keratinocytes.

Authors:  Valentina Rapisarda; Igor Malashchuk; Inemo E Asamaowei; Krzysztof Poterlowicz; Michael Y Fessing; Andrey A Sharov; Iakowos Karakesisoglou; Vladimir A Botchkarev; Andrei Mardaryev
Journal:  J Invest Dermatol       Date:  2017-06-06       Impact factor: 8.551

10.  Nuclear shape changes are induced by knockdown of the SWI/SNF ATPase BRG1 and are independent of cytoskeletal connections.

Authors:  Karen M Imbalzano; Nathalie Cohet; Qiong Wu; Jean M Underwood; Anthony N Imbalzano; Jeffrey A Nickerson
Journal:  PLoS One       Date:  2013-02-06       Impact factor: 3.240

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  57 in total

Review 1.  The challenge of staying in shape: nuclear size matters.

Authors:  Pallavi Deolal; Gurranna Male; Krishnaveni Mishra
Journal:  Curr Genet       Date:  2021-03-29       Impact factor: 3.886

Review 2.  Organelle size scaling over embryonic development.

Authors:  Chase C Wesley; Sampada Mishra; Daniel L Levy
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-01-31       Impact factor: 5.814

3.  Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice.

Authors:  Kaushikaram Subramanian; Martin Weigert; Oliver Borsch; Heike Petzold; Alfonso Garcia-Ulloa; Eugene W Myers; Marius Ader; Irina Solovei; Moritz Kreysing
Journal:  Elife       Date:  2019-12-11       Impact factor: 8.140

4.  A Tour de Force on the Double Helix: Exploiting DNA Mechanics To Study DNA-Based Molecular Machines.

Authors:  Michael R Wasserman; Shixin Liu
Journal:  Biochemistry       Date:  2019-06-28       Impact factor: 3.162

Review 5.  "Looping In" Mechanics: Mechanobiologic Regulation of the Nucleus and the Epigenome.

Authors:  Eric N Dai; Su-Jin Heo; Robert L Mauck
Journal:  Adv Healthc Mater       Date:  2020-04-14       Impact factor: 9.933

6.  Viscoelasticity and Volume of Cortical Neurons under Glutamate Excitotoxicity and Osmotic Challenges.

Authors:  Yuri M Efremov; Ekaterina A Grebenik; Rinat R Sharipov; Irina A Krasilnikova; Svetlana L Kotova; Anastasia A Akovantseva; Zanda V Bakaeva; Vsevolod G Pinelis; Alexander M Surin; Peter S Timashev
Journal:  Biophys J       Date:  2020-09-28       Impact factor: 4.033

7.  Nuclear Membrane Rupture and Its Consequences.

Authors:  John Maciejowski; Emily M Hatch
Journal:  Annu Rev Cell Dev Biol       Date:  2020-07-21       Impact factor: 13.827

Review 8.  Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields.

Authors:  Andrews Akwasi Agbleke; Assaf Amitai; Jason D Buenrostro; Aditi Chakrabarti; Lingluo Chu; Anders S Hansen; Kristen M Koenig; Ajay S Labade; Sirui Liu; Tadasu Nozaki; Sergey Ovchinnikov; Andrew Seeber; Haitham A Shaban; Jan-Hendrik Spille; Andrew D Stephens; Jun-Han Su; Dushan Wadduwage
Journal:  Mol Cell       Date:  2020-08-07       Impact factor: 17.970

Review 9.  Polymer perspective of genome mobilization.

Authors:  Colleen J Lawrimore; Josh Lawrimore; Yunyan He; Sergio Chavez; Kerry Bloom
Journal:  Mutat Res       Date:  2020-05-26       Impact factor: 2.433

10.  Protamines from liverwort are produced by post-translational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones.

Authors:  Robert Anthony D'Ippolito; Naoki Minamino; Ciro Rivera-Casas; Manjinder S Cheema; Dina L Bai; Harold E Kasinsky; Jeffrey Shabanowitz; Jose M Eirin-Lopez; Takashi Ueda; Donald F Hunt; Juan Ausió
Journal:  J Biol Chem       Date:  2019-09-16       Impact factor: 5.157

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