| Literature DB >> 30882938 |
Stefan van der Vorm1, Thomas Hansen1, Erwin R van Rijssel1, Rolf Dekkers1, Jerre M Madern1, Herman S Overkleeft1, Dmitri V Filippov1, Gijsbert A van der Marel1, Jeroen D C Codée1.
Abstract
The 3D shape of glycosyl oxocarbenium ions determines their stability and reactivity and the stereochemical course of SN 1 reactions taking place on these reactive intermediates is dictated by the conformation of these species. The nature and configuration of functional groups on the carbohydrate ring affect the stability of glycosyl oxocarbenium ions and control the overall shape of the cations. We herein map the stereoelectronic substituent effects of the C2-azide, C2-fluoride and C4-carboxylic acid ester on the stability and reactivity of the complete suite of diastereoisomeric furanoses by using a combined computational and experimental approach. Surprisingly, all furanosyl donors studied react in a highly stereoselective manner to provide the 1,2-cis products, except for the reactions in the xylose series. The 1,2-cis selectivity for the ribo-, arabino- and lyxo-configured furanosides can be traced back to the lowest-energy 3 E or E3 conformers of the intermediate oxocarbenium ions. The lack of selectivity for the xylosyl donors is related to the occurrence of oxocarbenium ions adopting other conformations.Entities:
Keywords: conformation analysis; energy landscape maps; glycosylation; oxocarbenium ions; substituent effect
Year: 2019 PMID: 30882938 PMCID: PMC6563709 DOI: 10.1002/chem.201900651
Source DB: PubMed Journal: Chemistry ISSN: 0947-6539 Impact factor: 5.236
Figure 1Target donors 1–12 and the subsequent stereoselectivity investigation by glycosylations and computational analysis (Bn=benzyl).
Scheme 1a) i) 2,2,6,6‐Tetramethylpiperidine N‐oxyl (TEMPO), diacetoxyiodobenzene (BAIB), dichloromethane, H2O; ii) MeI, K2CO3, DMF; b) trifluoroacetic acid (TFA)/H2O (9/1); c) 2,2,2‐trifluoro‐N‐phenylacetimidoyl chloride, Cs2CO3, acetone, H2O; d) trifluoromethanesulfonic anhydride (Tf2O), pyridine, dichloromethane; e) NaN3, DMF, see Table 1; f) tetrabutylammonium fluoride (TBAF), THF; or CsF, tert‐amyl alcohol, see Table 1; g) HCOOH, H2O; h) 2,2,2‐trifluoro‐N‐phenylacetimidoyl chloride, 1,5‐diazabicyclo[5.4.0]undec‐5‐ene (DBU), dichloromethane; i) TFA, H2O, THF; j) 4‐dimethylaminopyridine (DMAP), diisopropylethylamine (DIPEA), thiophosgene, dichloromethane; k) 1,3‐dimethyl‐2‐phenyl‐1,3,2‐diazaphospholidine, toluene; l) N‐(phenylseleno)phthalimide, azidotrimethylsilane (TMSN3), TBAF, dichloromethane; m) N‐iodosuccinimide (NIS), H2O, acetone, THF.
Synthesis of C2‐modified methyl glycosides 33–40 through C2‐triflate inversion.
| Entry | Triflate | Cond.[a] | Substitution | Yield | Side products |
|---|---|---|---|---|---|
| from | |||||
| 1 |
| A (N3) |
| 93 | – |
| 2 |
| B (TBAF) |
| 71 | – |
| 3 |
| C (CsF) |
| 86 | – |
| from | |||||
| 4 |
| A |
| 86[b] |
|
| 5 |
| B |
| 42 |
|
| 6 |
| C |
| 63 |
|
| from | |||||
| 7 |
| A[c] |
| 67 |
|
| 8 |
| B[d] |
| 44 |
|
| 9 |
| C[e] |
| – |
|
| 10 |
| A[c] |
| – |
|
| 11 |
| B[d] |
| – |
|
| 12 |
| C |
| – |
|
| from | |||||
| 13 |
| A,B,C |
| – |
|
[a] Reagents and conditions: A) 0.2 m solution in DMF, NaN3 (5 equiv), 80 °C, 2 h; B) 0.2 m solution in THF, TBAF (2.5 equiv), 0–20 °C, overnight; C) 0.35 m solution in tert‐amyl alcohol, CsF (4 equiv), 90 °C, overnight. [b] Combined yield of 33 and 51 as a 4:1 mixture. [c] Overnight. [d] 70 °C, 5 h for entry 8, overnight for entry 11. [e] 110 °C overnight. [f] α/β=88:12. [g] Yield not determined.
Figure 2A) Observed side products 51–56 and 40β. B) Proposed reaction pathways for the formation of 51 and 52. C) Proposed reaction pathways for the formation of 53α and 54α (path A) as well as 55 (path B). D) Proposed reaction pathways for the formation of 53β and 54β (path A) as well as 40β (path C).
Glycosylation reactions of donors 1–12 and 57–60 with the acceptors [D]TES and allyl‐TMS.[a]
|
| |||||
|---|---|---|---|---|---|
| Entry | Donor | Acceptor | Product | 1,2‐ | Yield [%] |
|
| |||||
| 1 |
| [D]TES |
| >98:2 | 50[b] |
| 2 |
| allyl‐TMS |
| >98:2 | 79 |
| 3 |
| [D]TES |
| >98:2 | 68 |
| 4 |
| allyl‐TMS |
| >98:2 | 76 |
|
| |||||
| 5 |
| [D]TES |
| <2:98 | 62[b] |
| 6 |
| allyl‐TMS |
| 5:95 | 76 |
| 7 |
| [D]TES |
| <2:98 | 57 |
| 8 |
| allyl‐TMS |
| <2:98 | 79 |
|
| |||||
| 9 |
| [D]TES |
| <2:98 | 100[b] |
| 10 |
| allyl‐TMS |
| <2:98 | 76 |
| 11 |
| [D]TES |
| <2:98 | 59 |
| 12 |
| allyl‐TMS |
| <2:98 | 90 |
|
| |||||
| 13 |
| [D]TES |
| 85:15 | 40[b] |
| 14 |
| allyl‐TMS |
| 45:55 | 57[c] |
| 15 |
| [D]TES |
| 85:15 | 68[c] |
| 16 |
| allyl‐TMS |
| 70:30 | 62 |
[a] Anomeric configuration established by HSQC‐HECADE and NOESY NMR spectroscopy.48, 49, 50 Detailed experimental conditions are provided in the Experimental Section. [b] Literature values, see reference 15. [c] Calculated yields from isolated mixed fractions.
Figure 3Structures 78–81 identified as side products in the glycosylation reactions of xylosyl imidate donors. Percentages obtained from the crude 1H NMR.
Figure 4A) The two‐conformer model, visualising the preferential nucleophilic attack from the inside face. Important rotations are denoted by dashed arrows. B) The two principal conformations of the two‐conformer model (E 3–3 E) shown for every carbohydrate configuration, examples taken as their tri‐O‐benzyl‐protected form. The colours indicate the relative preferential orientations for H2 and O3: green is relatively stabilising whereas red is relatively destabilising. C) Pseudo‐rotational circle showing the twenty canonical furanoside structures, with phase‐angles (P) and puckering amplitudes (τ m). D) Possible C4−C5 rotamers: gg, gt and tg for the C5‐OMe oxocarbenium ions, and two rotamers, eclipsed and bisected, for the C4‐CO2Me oxocarbenium ions.
Figure 5Conformational energy landscape maps for the four diastereoisomeric pentofuranosides and their C5 and C2 modifications. Energies are expressed as Δ in [kcal mol−1].