| Literature DB >> 30875412 |
Samuel Guan Wei Ow1, Pei Yi Ong1, Soo-Chin Lee1,2.
Abstract
BACKGROUND: Due to historically low uptake of genetic testing, the mutational spectrum of Asians with Hereditary Breast Cancer (HBC) is not well understood. This study sought to understand the incidence and spectrum of germline mutations in Asian patients with suspected HBC in a clinic setting.Entities:
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Year: 2019 PMID: 30875412 PMCID: PMC6420039 DOI: 10.1371/journal.pone.0213746
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Clinical characteristics of probands who underwent genetic testing (N = 460).
| Characteristics | No. | (%) | |
|---|---|---|---|
| Gender | Female | 429 | (93.3) |
| Male | 31 | (6.7) | |
| Age at Time of Visit | Mean (Range) | 47.8y | (18, 85) |
| Median | 46y | ||
| Ethnicity | Chinese | 279 | (60.7) |
| Indian | 49 | (10.7) | |
| Caucasian | 34 | (7.4) | |
| Malay | 27 | (5.9) | |
| Indonesian | 26 | (5.7) | |
| Middle Eastern | 17 | (3.7) | |
| Filipino | 8 | (1.7) | |
| Others | 20 | (4.3) | |
| Number of Cancer (CA) Primaries | Cancer-free | 46 | (10.0) |
| 1 | 337 | (73.3) | |
| 2 | 69 | (15.0) | |
| ≥3 | 8 | (1.7) | |
| Age of first CA Onset (n = 414) | Mean (Range) | 44.4y | (17, 83) |
| Median | 43y | ||
| Primary Site of CA | Breast | 289 | (69.8) |
| Ovary | 102 | (24.6) | |
| Prostate | 8 | (1.9) | |
| Colon | 5 | (1.2) | |
| Endometrium | 3 | (0.7) | |
| Pancreas | 3 | (0.7) | |
| Adrenal | 1 | (0.2) | |
| Cervix | 1 | (0.2) | |
| Paraganglioma | 1 | (0.2) | |
| Thyroid | 1 | (0.2) | |
| Personal History | Breast CA ≤40y | 158 | (34.4) |
| Bilateral Breast CA | 38 | (8.3) | |
| Breast and Ovary CA | 17 | (3.7) | |
| Pancreas and/or Prostate CA | 12 | (2.6) | |
| Male Breast CA | 7 | (1.5) | |
| Family History | Breast CA | 242 | (52.6) |
| Ovary CA | 91 | (19.8) | |
| Prostate CA | 31 | (6.7) | |
| Pancreas CA | 15 | (3.3) | |
| 41 | (8.9) |
aEurasian (n = 4), Myanmese (n = 4), Vietnamese (n = 4), South American (n = 4), Cambodian (n = 1), Japanese (n = 1), Mauritian (n = 1), Thai (n = 1)
bPatient was diagnosed with metastatic cervical cancer, and noted to have a BRCA1 mutation on somatic tumor sequencing
cPatient has family history of young-onset breast cancer
Test strategy (N = 460).
| Strategy | Genes tested | No. | (%) |
|---|---|---|---|
| Predictive Testing (Single site mutation analysis) (n = 41) | 24 | (57.1) | |
| 15 | (35.7) | ||
| 2 | (4.8) | ||
| Targeted Testing (n = 156) | 149 | (95.5) | |
| 6 | (3.8) | ||
| 1 | (0.6) | ||
| Panel-based Testing (n = 263) | 14-gene panel | 2 | (0.8) |
| 29-gene panel | 32 | (12.2) | |
| 34-gene panel | 83 | (31.6) | |
| 49-gene panel | 146 | (55.5) |
Fig 1Proportion of pathogenic mutations detected in BRCA1/2 and non-BRCA1/2 genes.
Factors associated with increased odds of harboring a pathogenic mutation (N = 460).
| Univariate Analysis | Multivariate Analysis (Best Model) | ||||
|---|---|---|---|---|---|
| OR (95% CI) | p-value | OR (95% CI) | p-value | ||
| Personal History of | CA Onset ≤40y | 1.14 (0.76, 1.69) | 0.53 | ||
| Breast CA | 0.69 (0.46, 1.03) | 0.07 | |||
| 0.81 (0.53, 1.25) | 0.35 | 1.73 (1.01, 2.98) | 0.04 | ||
| 1.42 (0.91, 2.22) | 0.13 | 2.45 (1.40, 2.98) | 0.02 | ||
| Breast and Ovary CA | 2.74 (1.03, 7.25) | 0.04 | |||
| 1.52 (0.91, 2.53) | 0.11 | 1.89 (1.08, 3.31) | 0.03 | ||
| Family History of | 2.10 (1.39, 3.17) | <0.01 | 2.13 (1.34, 3.37) | <0.01 | |
| 4.13 (2.56, 6.67) | <0.01 | 3.95 (2.32, 6.71) | <0.01 | ||
| 4.55 (2.43, 9.30) | <0.01 | 3.56 (1.65, 7.70) | <0.01 | ||
Fig 2Proportion of pathogenic mutations detected in BRCA1/2 and non-BRCA1/2 genes by Ethnicity (N = 419).
(Excluding n = 41 probands who underwent predictive testing) Proportion of Pathogenic Mutations by Ethnicity.
Fig 3Distribution of variants of uncertain significance (VUS) detected in 125 probands.
VUS Count by Gene.