| Literature DB >> 30874608 |
Ya Bin Wei1,2,3, Michael McCarthy3,4, Hongyan Ren5,6, Tania Carrillo-Roa7, Tatyana Shekhtman3,4, Anna DeModena3,4, Jia Jia Liu8,9, Susan G Leckband1,4, Ole Mors10, Marcella Rietschel11, Neven Henigsberg12, Annamaria Cattaneo13, Elisabeth B Binder7,14, Katherine J Aitchison6, John R Kelsoe15,16,17.
Abstract
Predicting antidepressant response has been a clinical challenge for mood disorder. Although several genome-wide association studies have suggested a number of genetic variants to be associated with antidepressant response, the sample sizes are small and the results are difficult to replicate. Previous animal studies have shown that knockout of the serotonin receptor 7 gene (HTR7) resulted in an antidepressant-like phenotype, suggesting it was important to antidepressant action. In this report, in the first stage, we used a cost-effective pooled-sequencing strategy to sequence the entire HTR7 gene and its regulatory regions to investigate the association of common variants in HTR7 and clinical response to four selective serotonin reuptake inhibitors (SSRIs: citalopram, paroxetine, fluoxetine and sertraline) in a retrospective cohort mainly consisting of subjects with bipolar disorder (n = 359). We found 80 single-nucleotide polymorphisms (SNPs) with false discovery rate < 0.05 associated with response to paroxetine. Among the significant SNPs, rs7905446 (T/G), which is located at the promoter region, also showed nominal significance (P < 0.05) in fluoxetine group. GG/TG genotypes for rs7905446 and female gender were associated with better response to two SSRIs (paroxetine and fluoxetine). In the second stage, we replicated this association in two independent prospective samples of SSRI-treated patients with major depressive disorder: the MARS (n = 253, P = 0.0169) and GENDEP studies (n = 432, P = 0.008). The GG/TG genotypes were consistently associated with response in all three samples. Functional study of rs7905446 showed greater activity of the G allele in regulating expression of HTR7. The G allele displayed higher luciferase activity in two neuronal-related cell lines, and estrogen treatment decreased the activity of only the G allele. Electrophoretic mobility shift assay suggested that the G allele interacted with CCAAT/enhancer-binding protein beta transcription factor (TF), while the T allele did not show any interaction with any TFs. Our results provided novel pharmacogenomic evidence to support the role of HTR7 in association with antidepressant response.Entities:
Mesh:
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Year: 2019 PMID: 30874608 PMCID: PMC6745302 DOI: 10.1038/s41380-019-0397-1
Source DB: PubMed Journal: Mol Psychiatry ISSN: 1359-4184 Impact factor: 15.992
Clinical characteristics of the study groups that underwent pooled-DNA sequencing
| Treatment | N | Males | Age | Caucasian | BP vs MDD vs | Age of | Comorbidities (%) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Psychosis | Panic | Alcohol | Substance | PTSD | |||||||
| Good responder | 16 | 50.0 | 44 (22-58) | 100.0 | 100 vs 0 vs 0 | 17 (9.0) | 68.8 | 20.0 | 31.1 | 31.3 | 43.8 |
| Poor responder | 51 | 58.8 | 46 (24-67) | 86.3 | 96.1 vs 2 vs 2 | 16 (8.7) | 40.0 | 14.0 | 32.0 | 30.0 | 48.0 |
| Good responder | 26 | 50.0 | 49 (22-70) | 92.3 | 80.7 vs 15.4 vs 3.8 | 19 (11.3) | 52.0 | 19.2 | 38.5 | 34.6 | 15.4 |
| Poor responder | 109 | 69.7 | 47 (20-72) | 93.6 | 97.2 vs 2.8 vs 0 | 18 (10.7) | 46.7 | 14.7 | 42.2 | 39.4 | 27.5 |
| Good responder | 80 | 45 (20-84) | 96.3 | 80.1 vs 16.3 vs 3.8 | 17 (7.3) | 54.1 | 20.3 | 32.9 | 29.1 | 19.0 | |
| Poor responder | 143 | 47 (21-76) | 89.5 | 95.1 vs 4.2 vs 0.7 | 19 (10.2) | 50.0 | 18.3 | 42.3 | 33.1 | 27.5 | |
| Good responder | 58 | 48.3 | 44 (18-72) | 89.7 | 86.2 vs 10.3 vs 3.4 | 17 (9.3) | 55.4 | 26.3 | 28.1 | 21.2 | |
| Poor responder | 111 | 59.5 | 47 (21-68) | 88.3 | 93.7 vs 6.3 vs 0 | 17 (7.9) | 51.8 | 19.8 | 32.4 | 32.4 | |
SSRI: Selective serotonin reuptake inhibitors; BP: Bipolar disorder; MDD: Major depressive disorder; SABP: Schizoaffective disorder, bipolar type;
PTSD: Posttraumatic stress disorder
Median (range)
Mean (standard deviation)
P < 0.05,
P < 0.01
Top SNPs in HTR7 gene associated with response to paroxetine in the retrospective cohort
| SNP ID | Position[ | Reference | Alternative | FDR | ||
|---|---|---|---|---|---|---|
| 5’ upstream | Chr10: 92620789 | A | G | 0.001346 | 0.0134 | |
| Chr10: 92620148 | G | C | 0.008268 | 0.0241 | ||
| rs1935346 | Chr10: 92622426 | T | C | 0.008589 | 0.0244 | |
| Promoter | Chr10: 92619161 | T | G | 0.01695 | 0.0387 | |
| Intron | rs4262637 | Chr10: 92526004 | T | C | 9.31e-05 | 0.007868 |
| rs7912164 | Chr10: 92519954 | T | C | 5.14e-05 | 0.007868 | |
| rs111631884 | Chr10: 92571019 | T | G | 0.00015 | 0.008709 |
SNP: single nucleotide polymorphism; FDR: false discovery rate
In high linkage disequilibrium with each other
GRCh37/hg19 assembly
Figure 1.Rs7905446 is in high linkage disequilibrium with two top SNPs (rs6583737 and rs12254390) in the 5’ upstream region of HTR7 gene. A number of transcription factors such as CEBPB in ENCODE database showed binding signals around rs7905446, implicating a functional SNP.
Association between HTR7 promoter rs7905446 and antidepressants response in Caucasians from three cohorts
| β | OR | P-value | |
|---|---|---|---|
| Paroxetine (n=124) | |||
| rs7905446 | 1.658 | 5.250 | |
| Sex | 1.059 | 2.883 | |
| Age | −0.028 | 0.973 | 0.191 |
| Paroxetine + fluoxetine (n=266) | |||
| rs7905446 | 0.758 | 2.135 | |
| Sex | 0.964 | 2.623 | |
| Age | −0.005 | 0.995 | 0.649 |
| SSRI (n=253) | |||
| rs7905446 | 0.681 | 1.976 | |
| Sex | −0.310 | 0.733 | 0.272 |
| Age | −0.013 | 0.987 | 0.190 |
| SSRI + SNRI (n=542) | |||
| rs7905446 | 0.378 | 1.460 | |
| Sex | −0.319 | 0.727 | 0.086 |
| Age | 0.0009 | 1.001 | 0.897 |
| All antidepressants (n=837) | |||
| rs7905446 | 0.326 | 1.385 | |
| Sex | −0.156 | 0.856 | 0.299 |
| Age | 0.0003 | 1.000 | 0.958 |
| Escitalopram (n=432) | |||
| rs7905446 | 0.512 | 1.669 | |
| Sex | −0.297 | 0.743 | 0.178 |
| Age | −0.036 | 0.970 | 0.001 |
| Center ID | 0.010 | 1.01 | 0.681 |
| Nortriptyline (n=328) | |||
| rs7905446 | −0.366 | 0.694 | 0.154 |
| Sex | −0.280 | 0.889 | 0.302 |
| Age | −0.004 | 0.996 | 0.713 |
| Center ID | −0.035 | 0.966 | 0.219 |
| Escitalopram + nortriptyline (n=730) | |||
| rs7905446 | 0.132 | 1.141 | 0.390 |
| Sex | −0.112 | 0.894 | 0.476 |
| Age | −0.024 | 0.976 | <0.001 |
| Center ID | −0.007 | 0.993 | 0.720 |
SSRI: Selective serotonin reuptake inhibitors; SNRI: Serotonin and norepinephrine reuptake inhibitors
TT vs TG/GG using logistic regression adjusted for gender and age
Men vs women using logistic regression adjusted for rs7905446 and age
TT vs TG/GG using logistic regression adjusted for gender, age and center ID
Figure 2.Women gender and individual with rs7905446 GG/GT genotypes showed better response to SSRIs (paroxetine + fluoxetine).
Figure 3.The rs7905446-G allele displayed higher luciferase activity compared with the rs7905446-T allele tested in two cell lines. High concentration of β-estradiol (E2) treatment significantly reduced the activity in only the G allele. **P < 0.01; ***P < 0.001.
Figure 4.Electrophoretic mobility shift assay showed biotin-labeled probe containing the rs7905446-G can produce a shift (arrow) when incubated with the HeLa cell nuclear extract, suggesting an interaction with transcription factors. An anti-CEBPB antibody generated a supershift (asterisk), suggesting an interaction with CEBPB transcription factor.