Literature DB >> 30874468

Circular RNAs in human and vertebrate neural retinas.

Lan-Fang Sun1,2, Bing Zhang3,4, Xue-Jiao Chen1,2, Xiao-Yun Wang1,2, Bo-Wen Zhang1,2, Yang-Yang Ji1,2, Kun-Chao Wu1,2, Jinyu Wu3, Zi-Bing Jin1,2.   

Abstract

Circular RNAs (circRNAs) belong to an endogenous class of RNA molecules with both ends covalently linked in a circle. Although their expression pattern in the mammalian brain has been well studied, the characteristics and functions of circRNAs in retinas remain unknown. To reveal the whole expression profiles of circRNAs in the neural retina, we investigated retinal RNAs of human, monkey, mouse, pig, zebrafish and tree shrew and detected thousands of circRNAs showing conservation and variation in the retinas across different vertebrate species. We further investigated one of the abundant circRNAs, circPDE4B, identified in human retina. Silencing of circPDE4B significantly inhibited the proliferation of human A549 cells. Functional assays demonstrated that circPDE4B could sponge miR-181C, thereby altering the cell phenotype. We have explored the retinal circRNA repertoires across human and different vertebrates, which provide new insights into the important role of circRNAs in the vertebrate retinas, as well as in related human diseases.

Entities:  

Keywords:  circPDE4B; circular RNA; different vertebrate species; retina; sponge

Mesh:

Substances:

Year:  2019        PMID: 30874468      PMCID: PMC6546369          DOI: 10.1080/15476286.2019.1591034

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  43 in total

1.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

2.  Evolution of activity patterns and chromatic vision in primates: morphometrics, genetics and cladistics.

Authors:  C P Heesy; C F Ross
Journal:  J Hum Evol       Date:  2001-02       Impact factor: 3.895

3.  Detection, annotation and visualization of alternative splicing from RNA-Seq data with SplicingViewer.

Authors:  Qi Liu; Chong Chen; Enjian Shen; Fangqing Zhao; Zhongsheng Sun; Jinyu Wu
Journal:  Genomics       Date:  2011-12-28       Impact factor: 5.736

4.  The novel distribution of phosphodiesterase-4 subtypes within the rat retina.

Authors:  C M Whitaker; N G F Cooper
Journal:  Neuroscience       Date:  2009-07-26       Impact factor: 3.590

5.  Spectral and temporal sensitivity of cone-mediated responses in mouse retinal ganglion cells.

Authors:  Yanbin V Wang; Michael Weick; Jonathan B Demb
Journal:  J Neurosci       Date:  2011-05-25       Impact factor: 6.167

Review 6.  RNA structure and the mechanisms of alternative splicing.

Authors:  C Joel McManus; Brenton R Graveley
Journal:  Curr Opin Genet Dev       Date:  2011-04-27       Impact factor: 5.578

7.  Gene therapy for red-green colour blindness in adult primates.

Authors:  Katherine Mancuso; William W Hauswirth; Qiuhong Li; Thomas B Connor; James A Kuchenbecker; Matthew C Mauck; Jay Neitz; Maureen Neitz
Journal:  Nature       Date:  2009-09-16       Impact factor: 49.962

8.  Distribution and density of medium- and short-wavelength selective cones in the domestic pig retina.

Authors:  Anita Hendrickson; David Hicks
Journal:  Exp Eye Res       Date:  2002-04       Impact factor: 3.467

9.  Anxiogenic-like behavioral phenotype of mice deficient in phosphodiesterase 4B (PDE4B).

Authors:  Han-Ting Zhang; Ying Huang; Anbrin Masood; Lisa R Stolinski; Yunfeng Li; Lei Zhang; Daniel Dlaboga; S-L Catherine Jin; Marco Conti; James M O'Donnell
Journal:  Neuropsychopharmacology       Date:  2007-08-15       Impact factor: 7.853

10.  MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

Authors:  Kai Wang; Darshan Singh; Zheng Zeng; Stephen J Coleman; Yan Huang; Gleb L Savich; Xiaping He; Piotr Mieczkowski; Sara A Grimm; Charles M Perou; James N MacLeod; Derek Y Chiang; Jan F Prins; Jinze Liu
Journal:  Nucleic Acids Res       Date:  2010-08-27       Impact factor: 16.971

View more
  6 in total

Review 1.  Expression and function of circular RNAs in the mammalian brain.

Authors:  Kaiyu Xu; Ying Zhang; Jiali Li
Journal:  Cell Mol Life Sci       Date:  2021-02-08       Impact factor: 9.261

Review 2.  The Role of MiR-181 Family Members in Endothelial Cell Dysfunction and Tumor Angiogenesis.

Authors:  Chun Yang; Victor Passos Gibson; Pierre Hardy
Journal:  Cells       Date:  2022-05-18       Impact factor: 7.666

3.  Genome-wide identification and functional analysis of circRNAs in Trichophyton rubrum conidial and mycelial stages.

Authors:  Xingwei Cao; Xingye Xu; Jie Dong; Ying Xue; Lilian Sun; Yafang Zhu; Tao Liu; Qi Jin
Journal:  BMC Genomics       Date:  2022-01-04       Impact factor: 3.969

Review 4.  Circular RNAs in the Central Nervous System.

Authors:  Meng-Lan Li; Wen Wang; Zi-Bing Jin
Journal:  Front Mol Biosci       Date:  2021-03-19

5.  Involvement of CircRNA Expression Profile in Diabetic Retinopathy and Its Potential Diagnostic Value.

Authors:  Hengqian He; Juntao Zhang; Weikun Gong; Mengyun Liu; Hao Liu; Xiaoyong Li; Yufei Wu; Qinkang Lu
Journal:  Front Genet       Date:  2022-02-17       Impact factor: 4.599

6.  CircNF1-419 improves the gut microbiome structure and function in AD-like mice.

Authors:  Chen Diling; Qi Longkai; Guo Yinrui; Liu Yadi; Tang Xiaocui; Zhu Xiangxiang; Zeng Miao; Li Ran; Shuai Ou; Wang Dongdong; Xie Yizhen; Yuan Xujiang; Burton B Yang; Wu Qingping
Journal:  Aging (Albany NY)       Date:  2020-01-06       Impact factor: 5.682

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.