| Literature DB >> 30867894 |
Marco Bortoli1, Marco Dalla Tiezza1, Cecilia Muraro1, Chiara Pavan2, Giovanni Ribaudo3, Anna Rodighiero1, Cristina Tubaro1, Giuseppe Zagotto3, Laura Orian1.
Abstract
Zolpidem (N,N-Dimethyl-2-[6-methyl-2-(4-methylphenyl)imidazo[1,2-a]pyridin-3-yl]acetamide) is a well-known drug for the treatment of sleeping disorders. Recent literature reports on positive effects of zolpidem therapy on improving renal damage after cisplatin and on reducing akinesia without sleep induction. This has been ascribed to the antioxidant and neuroprotective capacity of this molecule, and tentatively explained according to a generic structural similarity between zolpidem and melatonin. In this work, we investigate in silico the antioxidant potential of zolpidem as scavenger of five ROSs, acting via hydrogen atom transfer (HAT) mechanism; computational methodologies based on density functional theory are employed. For completeness, the analysis is extended to six metabolites. Thermodynamic and kinetic results disclose that indeed zolpidem is an efficient radical scavenger, similarly to melatonin and Trolox, supporting the biomedical evidence that the antioxidant potential of zolpidem therapy may have a beneficial effect against oxidative injury, which is emerging as an important etiopathogenesis in numerous severe diseases, including psychiatric disorders.Entities:
Keywords: Antioxidant activity; DFT calculations; DFT, Density Functional Theory; HAT, Hydrogen Atom Transfer (mechanism); M06-2X, Minnesota Hybrid functional with 54% Hartree-Fock exchange; NBO, Natural Bond Orbitals; NPA, Natural Population Analysis; Oxidative stress; PC, Product Complex; Psychiatric disorders; RAF, Radical Adduct Formation (mechanism); RC, Reactant Complex; ROS, Reactive Oxygen Species; Radical scavenging; SMD, Solvation Model based on Density; TS, Transition State; Zolpidem
Year: 2019 PMID: 30867894 PMCID: PMC6396081 DOI: 10.1016/j.csbj.2019.02.004
Source DB: PubMed Journal: Comput Struct Biotechnol J ISSN: 2001-0370 Impact factor: 7.271
Scheme 1Zolpidem (1), melatonin (2) and Trolox (3). The red numbers indicate the HAT sites.
Scheme 2Synthetic intermediates of zolpidem with antioxidant capacity.
Scheme 3HAT mechanism in zolpidem (1).
Scheme 4Metabolic paths of zolpidem; the sites which may be involved in HAT and are not present in 1 are in red.
Fig. 1ΔG°HAT (kcal mol−1) in gas-phase (a), in water (b) and in benzene (c) for the scavenging of HO•, CH3O•, HOO•, CH3OO• and CH2=CHOO• through HAT from all the available sites of 1. Level of theory: (SMD)-M06-2X/6‐311+G(d,p)//M06-2X/6-31G(d).
Fig. 2Spin densities on (1-H)• when HAT occurs from C4 (a) and C10 (b) and on (MX-H)• when HAT occurs from C4 (c) and from the OH group linked to C9 (d).
Fig. 3ΔG°HAT (kcal mol−1) in gas-phase (a), in water (b) and in benzene (c) for the scavenging of HO•, CH3O•, HOO•, CH3OO• and CH2=CHOO• through HAT from C4 site of 1 (included as reference) and of its metabolites. Level of theory: (SMD)-M06-2X/6‐311+G(d,p)//M06-2X/6-31G(d).
ΔG°HAT (kcal mol−1) and ΔG‡HAT (kcal mol−1) in gas-phase, water and benzene, for the scavenging of HO•, HOO•, CH3O•, CH3OO• and CH2=CHOO• through HAT from the OH group linked to C9 in metabolite MX (see Scheme 4). Level of theory: (SMD)-M06-2X/6‐311+G(d,p)//M06-2X/6-31G(d).
| ΔG°HAT | ΔG‡HAT | ΔG°HAT,water | ΔG‡HAT,water | ΔG°HAT,benzene | ΔG‡HAT,benzene | |
|---|---|---|---|---|---|---|
| HO• | −37.3 | 4.0 | −40.8 | 5.6 | −38.6 | 5.3 |
| HOO• | −5.7 | 12.9 | −8.3 | 14.3 | −6.5 | 14.8 |
| CH3O• | −22.8 | 8.7 | −25.7 | 16.1 | −23.5 | 10.2 |
| CH3OO• | −4.1 | 19.8 | −7.1 | 15.1 | −4.7 | 21.4 |
| CH2 = CHOO• | −7.0 | 12.7 | −10.6 | 10.4 | −8.0 | 14.3 |
ΔG‡HAT (kcal mol−1 for the scavenging of HO•, HOO•, CH3O•, CH3OO• and CH2=CHOO• radicals through HAT from C4 for 1 and its metabolites. Level of theory: (SMD)-M06-2X/6‐311+G(d,p)//M06-2X/6-31G(d).
| ΔG‡HAT | ΔG‡HAT,water | ΔG‡HAT,benzene | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HO• | HOO• | CH3O• | CH3OO• | CH2 = CHOO• | HO• | HOO• | CH3O• | CH3OO• | CH2 = CHOO• | HO• | HOO• | CH3O• | CH3OO• | CH2 = CHOO• | |
| 5.4 | 16.9 | 9.4 | 19.3 | 14.1 | 7.8 | 19.3 | 11.4 | 21.7 | 15.3 | 7.2 | 19.4 | 11.9 | 22.9 | 17.1 | |
| 4.4 | 16.6 | 8.8 | 18.9 | 14.3 | 7.0 | 19.0 | 10.8 | 21.5 | 15.6 | 6.3 | 19.1 | 11.3 | 22.5 | 17.3 | |
| 4.9 | 16.7 | 8.9 | 20.6 | 15.8 | 7.6 | 19.6 | 11.3 | 23.4 | 17.6 | 6.9 | 19.4 | 11.6 | 24.3 | 19.0 | |
| 5.4 | 17.6 | 9.7 | 19.4 | 14.7 | 7.8 | 19.5 | 11.6 | 21.8 | 15.8 | 7.2 | 19.9 | 12.1 | 22.9 | 17.7 | |
| 3.9 | 15.0 | 8.0 | 19.3 | 13.7 | 6.8 | 18.6 | 10.8 | 21.2 | 14.8 | 6.0 | 17.8 | 10.8 | 22.7 | 16.8 | |
| 4.7 | 17.6 | 8.4 | 17.9 | 13.2 | 7.2 | 19.4 | 10.0 | 19.9 | 13.7 | 6.5 | 19.8 | 10.9 | 21.4 | 16.1 | |
| 2.2 | 12.9 | 5.2 | 13.9 | 10.4 | 6.0 | 18.1 | 10.4 | 18.3 | 13.7 | 4.6 | 16.2 | 8.5 | 18.0 | 14.1 | |
Fig. 4Fully optimized transition state geometries of HAT from C4 to HO• in 1 and its metabolite MXI. Level of theory: M06-2X/6-31G(d).
Fig. 5SOMO of the transition state of HAT from C4 site in 1 to CH3O• computed with an isodensity value of 0.003. Level of theory: M06-2X/6‐311+G(d,p)//M06-2X/6-31G(d).