Literature DB >> 30861228

An ensemble of lipoxygenase structures reveals novel conformations of the Fe coordination sphere.

Svetlana Pakhomova1, William E Boeglin2, David B Neau3, Sue G Bartlett1, Alan R Brash2, Marcia E Newcomer1.   

Abstract

The regio- and stereo-specific oxygenation of polyunsaturated fatty acids is catalyzed by lipoxygenases (LOX); both Fe and Mn forms of the enzyme have been described. Structural elements of the Fe and Mn coordination spheres and the helical catalytic domain in which the metal center resides are highly conserved. However, animal, plant, and microbial LOX each have distinct features. We report five crystal structures of a LOX from the fungal plant pathogen Fusarium graminearum. This LOX displays a novel amino terminal extension that provides a wrapping domain for dimerization. Moreover, this extension appears to interfere with the iron coordination sphere, as the typical LOX configuration is not observed at the catalytic metal when the enzyme is dimeric. Instead novel tetra-, penta-, and hexa-coordinate Fe2+ ligations are apparent. In contrast, a monomeric structure indicates that with repositioning of the amino terminal segment, the enzyme can assume a productive conformation with the canonical Fe2+ coordination sphere.
© 2019 The Protein Society.

Entities:  

Keywords:  enzymes; lipid oxidation; lipoxygenase; protein structure; x-ray crystallography

Mesh:

Substances:

Year:  2019        PMID: 30861228      PMCID: PMC6459989          DOI: 10.1002/pro.3602

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  31 in total

1.  A single active site residue directs oxygenation stereospecificity in lipoxygenases: stereocontrol is linked to the position of oxygenation.

Authors:  Gianguido Coffa; Alan R Brash
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-20       Impact factor: 11.205

Review 2.  The stereochemistry of the reactions of lipoxygenases and their metabolites. Proposed nomenclature of lipoxygenases and related enzymes.

Authors:  H Kühn; T Schewe; S M Rapoport
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1986

3.  Crystal structure of soybean lipoxygenase L-1 at 1.4 A resolution.

Authors:  W Minor; J Steczko; B Stec; Z Otwinowski; J T Bolin; R Walter; B Axelrod
Journal:  Biochemistry       Date:  1996-08-20       Impact factor: 3.162

Review 4.  The structural basis for specificity in lipoxygenase catalysis.

Authors:  Marcia E Newcomer; Alan R Brash
Journal:  Protein Sci       Date:  2015-01-13       Impact factor: 6.725

5.  The formation of threo-11-hydroxy-trans-12: 13-epoxy-9-cis-octadecenoic acid by enzymic isomerisation of 13-L-hydroperoxy-9-cis, 11-transoctadecadienoic acid by soybean lipoxygenase-1.

Authors:  G J Garssen; G A Veldink; J F Vliegenthart; J Boldingh
Journal:  Eur J Biochem       Date:  1976-02-02

6.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  The opportunistic pathogen Pseudomonas aeruginosa carries a secretable arachidonate 15-lipoxygenase.

Authors:  Russell E Vance; Song Hong; Karsten Gronert; Charles N Serhan; John J Mekalanos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-06       Impact factor: 11.205

8.  Structure and interaction with phospholipids of a prokaryotic lipoxygenase from Pseudomonas aeruginosa.

Authors:  Albert Garreta; Silvana P Val-Moraes; Queralt García-Fernández; Montserrat Busquets; Carlos Juan; Antonio Oliver; Antonio Ortiz; Betty J Gaffney; Ignacio Fita; Àngels Manresa; Xavi Carpena
Journal:  FASEB J       Date:  2013-08-28       Impact factor: 5.191

9.  Spectroscopic characterization of soybean lipoxygenase-1 mutants: the role of second coordination sphere residues in the regulation of enzyme activity.

Authors:  Gerhard Schenk; Michael L Neidig; Jing Zhou; Theodore R Holman; Edward I Solomon
Journal:  Biochemistry       Date:  2003-06-24       Impact factor: 3.162

10.  Fluctuations of an exposed π-helix involved in lipoxygenase substrate recognition.

Authors:  Miles D Bradshaw; Betty J Gaffney
Journal:  Biochemistry       Date:  2014-07-29       Impact factor: 3.162

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