Literature DB >> 12809485

Spectroscopic characterization of soybean lipoxygenase-1 mutants: the role of second coordination sphere residues in the regulation of enzyme activity.

Gerhard Schenk1, Michael L Neidig, Jing Zhou, Theodore R Holman, Edward I Solomon.   

Abstract

Lipoxygenases are non-heme iron enzymes, which catalyze the stereo- and regiospecific hydroperoxidation of unsaturated fatty acids. Spectroscopic studies on soybean lipoxygenase have shown that the ferrous form of the enzyme is a mixture of five- and six-coordinate species (40 and 60%, respectively). Addition of substrate leads to a purely six-coordinate form. A series of mutations in the second coordination sphere (Q697E, Q697N, Q495A, and Q495E) were generated, and the structures of the mutants were solved by crystallography [Tomchick et al. (2001) Biochemistry 40, 7509-7517]. While this study clearly showed the contribution of H-bond interactions between the first and the second coordination spheres in catalysis, no correlation with the coordination environment of the Fe(II) was observed. A recent study using density-functional theory [Lehnert and Solomon (2002) J. Biol. Inorg. Chem. 8, 294-305] indicated that coordination flexibility, involving the Asn694 ligand, is regulated via H-bond interactions. In this paper, we investigate the solution structures of the second coordination sphere mutants using CD and MCD spectroscopy since these techniques are more sensitive indicators of the first coordination sphere ligation of Fe(II) systems. Our data demonstrate that the iron coordination environment directly relates to activity, with the mutations that have the ability to form a five-coordinate/six-coordinate mixture being more active. We propose that the H-bond between the weak Asn694 ligand and the Gln697 plays a key role in the modulation of the coordination flexibility of Asn694, and thus, is crucial for the regulation of enzyme reactivity.

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Year:  2003        PMID: 12809485     DOI: 10.1021/bi027380g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  On the relationships of substrate orientation, hydrogen abstraction, and product stereochemistry in single and double dioxygenations by soybean lipoxygenase-1 and its Ala542Gly mutant.

Authors:  Gianguido Coffa; Ann N Imber; Brendan C Maguire; Gurunathan Laxmikanthan; Claus Schneider; Betty J Gaffney; Alan R Brash
Journal:  J Biol Chem       Date:  2005-09-12       Impact factor: 5.157

2.  Enzyme structure and dynamics affect hydrogen tunneling: the impact of a remote side chain (I553) in soybean lipoxygenase-1.

Authors:  Matthew P Meyer; Diana R Tomchick; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

3.  Assembly and properties of heterobimetallic Co(II/III)/Ca(II) complexes with aquo and hydroxo ligands.

Authors:  David C Lacy; Young Jun Park; Joseph W Ziller; Junko Yano; A S Borovik
Journal:  J Am Chem Soc       Date:  2012-10-15       Impact factor: 15.419

4.  Gaining insight into the chemistry of lipoxygenases: a computational investigation into the catalytic mechanism of (8R)-lipoxygenase.

Authors:  Eric A C Bushnell; Riam Jamil; James W Gauld
Journal:  J Biol Inorg Chem       Date:  2013-01-30       Impact factor: 3.358

5.  Programmed chloroplast destruction during leaf senescence involves 13-lipoxygenase (13-LOX).

Authors:  Armin Springer; ChulHee Kang; Sachin Rustgi; Diter von Wettstein; Christiane Reinbothe; Stephan Pollmann; Steffen Reinbothe
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-11       Impact factor: 11.205

6.  Crystal structures of vegetative soybean lipoxygenase VLX-B and VLX-D, and comparisons with seed isoforms LOX-1 and LOX-3.

Authors:  Buhyun Youn; George E Sellhorn; Ryan J Mirchel; Betty J Gaffney; Howard D Grimes; ChulHee Kang
Journal:  Proteins       Date:  2006-12-01

7.  EPR of Mononuclear Non-Heme Iron Proteins.

Authors:  Betty J Gaffney
Journal:  Biol Magn Reson       Date:  2009-06-19

8.  Analysis of Hydrogen Tunneling in an Enzyme Active Site using von Neumann Measurements.

Authors:  Isaiah Sumner; Srinivasan S Iyengar
Journal:  J Chem Theory Comput       Date:  2010       Impact factor: 6.006

9.  Synthesis, structure, and physical properties for a series of monomeric iron(III) hydroxo complexes with varying hydrogen-bond networks.

Authors:  Jhumpa Mukherjee; Robie L Lucas; Matthew K Zart; Douglas R Powell; Victor W Day; A S Borovik
Journal:  Inorg Chem       Date:  2008-05-23       Impact factor: 5.165

10.  Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.

Authors:  Kieran S Hadler; Eric A Tanifum; Sylvia Hsu-Chen Yip; Natasa Mitić; Luke W Guddat; Colin J Jackson; Lawrence R Gahan; Kelly Nguyen; Paul D Carr; David L Ollis; Alvan C Hengge; James A Larrabee; Gerhard Schenk
Journal:  J Am Chem Soc       Date:  2008-10-03       Impact factor: 15.419

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