Literature DB >> 30857970

RNA Splicing: A New Paradigm in Host-Pathogen Interactions.

Komal Chauhan1, Haroon Kalam1, Ravi Dutt1, Dhiraj Kumar2.   

Abstract

RNA splicing brings diversity to the eukaryotic proteome. Different spliced variants of a gene may differ in their structure, function, localization, and stability influencing protein stoichiometry and physiological outcomes. Alternate spliced variants of different genes are known to associate with various chronic pathologies including cancer. Emerging evidence suggests precise regulation of splicing as fundamental to normal well-being. In this context, infection-induced alternative splicing has emerged as a new pivot of host function, which pathogenic microbes can alter-directly or indirectly-to tweak the host immune responses against the pathogen. The implications of these findings are vast, and although not explored much in the case of pathogenic infections, we present here examples from splicing mediated regulation of immune responses across a variety of conditions and explore how this fascinating finding brings a new paradigm to host-pathogen interactions.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Alternative Splicing; Gene Expression; Immune response; Infection; Splicing factors

Mesh:

Substances:

Year:  2019        PMID: 30857970      PMCID: PMC7115970          DOI: 10.1016/j.jmb.2019.03.001

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  112 in total

1.  A CD45 polymorphism associated with multiple sclerosis disrupts an exonic splicing silencer.

Authors:  K W Lynch; A Weiss
Journal:  J Biol Chem       Date:  2001-04-16       Impact factor: 5.157

Review 2.  Alternative Splicing in the Mammalian Nervous System: Recent Insights into Mechanisms and Functional Roles.

Authors:  Bushra Raj; Benjamin J Blencowe
Journal:  Neuron       Date:  2015-07-01       Impact factor: 17.173

3.  Synthesis of selective SRPK-1 inhibitors: novel tricyclic quinoxaline derivatives.

Authors:  Zsolt Székelyhidi; János Pató; Frigyes Wáczek; Péter Bánhegyi; Bálint Hegymegi-Barakonyi; Dániel Erös; György Mészáros; Ferenc Hollósy; Doris Hafenbradl; Sabine Obert; Bert Klebl; György Kéri; László Orfi
Journal:  Bioorg Med Chem Lett       Date:  2005-07-01       Impact factor: 2.823

4.  Mechanical Stress and Single Nucleotide Variants Regulate Alternative Splicing of the MYLK Gene.

Authors:  Joseph B Mascarenhas; Alex Y Tchourbanov; Hanli Fan; Sergei M Danilov; Ting Wang; Joe G N Garcia
Journal:  Am J Respir Cell Mol Biol       Date:  2017-01       Impact factor: 6.914

5.  Distinct Metabolic Signature of Human Bladder Cancer Cells Carrying an Impaired Fanconi Anemia Tumor-Suppressor Signaling Pathway.

Authors:  Jayabal Panneerselvam; Guoxiang Xie; Raymond Che; Mingming Su; Jun Zhang; Wei Jia; Peiwen Fei
Journal:  J Proteome Res       Date:  2016-03-16       Impact factor: 4.466

6.  Exon skipping-mediated dystrophin reading frame restoration for small mutations.

Authors:  Pietro Spitali; Paola Rimessi; Marina Fabris; Daniela Perrone; Sofia Falzarano; Matteo Bovolenta; Cecilia Trabanelli; Lara Mari; Elena Bassi; Sylvie Tuffery; Francesca Gualandi; Nadir M Maraldi; Patrizia Sabatelli-Giraud; Alessandro Medici; Luciano Merlini; Alessandra Ferlini
Journal:  Hum Mutat       Date:  2009-11       Impact factor: 4.878

Review 7.  Splicing in disease: disruption of the splicing code and the decoding machinery.

Authors:  Guey-Shin Wang; Thomas A Cooper
Journal:  Nat Rev Genet       Date:  2007-08-29       Impact factor: 53.242

Review 8.  LOX-1 and Its Splice Variants: A New Challenge for Atherosclerosis and Cancer-Targeted Therapies.

Authors:  Barbara Rizzacasa; Elena Morini; Sabina Pucci; Michela Murdocca; Giuseppe Novelli; Francesca Amati
Journal:  Int J Mol Sci       Date:  2017-01-29       Impact factor: 5.923

9.  Poliovirus 2A protease triggers a selective nucleo-cytoplasmic redistribution of splicing factors to regulate alternative pre-mRNA splicing.

Authors:  Enrique Álvarez; Alfredo Castelló; Luis Carrasco; José M Izquierdo
Journal:  PLoS One       Date:  2013-09-16       Impact factor: 3.240

10.  Alternative splicing of MALT1 controls signalling and activation of CD4(+) T cells.

Authors:  Isabel Meininger; Richard A Griesbach; Desheng Hu; Torben Gehring; Thomas Seeholzer; Arianna Bertossi; Jan Kranich; Andrea Oeckinghaus; Andrea C Eitelhuber; Ute Greczmiel; Andreas Gewies; Marc Schmidt-Supprian; Jürgen Ruland; Thomas Brocker; Vigo Heissmeyer; Florian Heyd; Daniel Krappmann
Journal:  Nat Commun       Date:  2016-04-12       Impact factor: 14.919

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  21 in total

1.  Trends in Symbiont-Induced Host Cellular Differentiation.

Authors:  Shelbi L Russell; Jennie Ruelas Castillo
Journal:  Results Probl Cell Differ       Date:  2020

Review 2.  Impacts and mechanisms of alternative mRNA splicing in cancer metabolism, immune response, and therapeutics.

Authors:  Qiu Peng; Yujuan Zhou; Linda Oyang; Nayiyuan Wu; Yanyan Tang; Min Su; Xia Luo; Ying Wang; Xiaowu Sheng; Jian Ma; Qianjin Liao
Journal:  Mol Ther       Date:  2021-11-15       Impact factor: 11.454

3.  Reovirus μ2 protein modulates host cell alternative splicing by reducing protein levels of U5 snRNP core components.

Authors:  Simon Boudreault; Mathieu Durand; Carole-Anne Martineau; Jean-Pierre Perreault; Guy Lemay; Martin Bisaillon
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 19.160

4.  Genome-wide alternative splicing profile in the posterior kidney of brown trout (Salmo trutta) during proliferative kidney disease.

Authors:  Arun Sudhagar; Mansour El-Matbouli; Gokhlesh Kumar
Journal:  BMC Genomics       Date:  2022-06-16       Impact factor: 4.547

5.  CASA: a comprehensive database resource for the COVID-19 Alternative Splicing Atlas.

Authors:  Yaxin Chen; Gang Wang; Jingyi Li; Lei Xia; Lin Zhu; Wenxing Li; Qiang Luo; Yinlu Liao; Yao Lin; Liyun Bi; Hubin Chen; Jiemei Chu; Yueqi Li; Jinming Su; Li Ye; Jun-Jun Jiang; Hao Liang; Weimin Li; Sanqi An
Journal:  J Transl Med       Date:  2022-10-20       Impact factor: 8.440

6.  Skipped Over: Tuning Natural Killer Cells Toward HIV Through Alternative Splicing.

Authors:  Daniel R Ram; Kyle Kroll; R Keith Reeves
Journal:  AIDS Res Hum Retroviruses       Date:  2020-09-28       Impact factor: 2.205

7.  Quantitative analysis of the splice variants expressed by the major hepatitis B virus genotypes.

Authors:  Chun Shen Lim; Vitina Sozzi; Margaret Littlejohn; Lilly K W Yuen; Nadia Warner; Brigid Betz-Stablein; Fabio Luciani; Peter A Revill; Chris M Brown
Journal:  Microb Genom       Date:  2021-01

8.  Global Proteome and Phosphoproteome Characterization of Sepsis-induced Kidney Injury.

Authors:  Yi-Han Lin; Maryann P Platt; Haiyan Fu; Yuan Gui; Yanlin Wang; Norberto Gonzalez-Juarbe; Dong Zhou; Yanbao Yu
Journal:  Mol Cell Proteomics       Date:  2020-09-22       Impact factor: 7.381

9.  Evolutionarily conserved regulation of immunity by the splicing factor RNP-6/PUF60.

Authors:  Chun Kew; Wenming Huang; Julia Fischer; Raja Ganesan; Nirmal Robinson; Adam Antebi
Journal:  Elife       Date:  2020-06-15       Impact factor: 8.140

Review 10.  From Gene to Protein-How Bacterial Virulence Factors Manipulate Host Gene Expression During Infection.

Authors:  Lea Denzer; Horst Schroten; Christian Schwerk
Journal:  Int J Mol Sci       Date:  2020-05-25       Impact factor: 5.923

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