Literature DB >> 30855273

A comparison of absorption and phase contrast for X-ray imaging of biological cells. Erratum.

Colin Nave1.   

Abstract

An error in the calculation for X-ray absorption imaging has been identified in the paper by Nave (2018) [J. Synchrotron Rad. 25, 1490-1504]. The required fluence and dose in the paper are a factor of ten too low for this mode of imaging. open access.

Entities:  

Keywords:  X-ray imaging; biological cells; dose and fluence requirements

Year:  2019        PMID: 30855273      PMCID: PMC6412174          DOI: 10.1107/S1600577519002601

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


The author regrets that an error in the calculations of the required fluence (and hence dose) for imaging by absorption was made in the paper by Nave (2018 ▸). This occurred because an incorrect number was applied when converting from the required number of photons incident on a pixel to a fluence (photons µm−2). The fluences and doses shown in Figs. 3 ▸ and 6 ▸ should all be increased by a factor of ten. As the error only occurred in the calculation for imaging by absorption, the dose ratios in Fig. 7 ▸ should be decreased by a factor of ten. These ratios are discussed in the text where the following corrections should be made:
Figure 3

Fluence and dose for protein in water with absorption contrast. Rose criteria 5 with the dose distributed over a model cell (70% water). The fluence and dose at 2% efficiency follows the zone plate efficiency adopted by Huang et al. (2009 ▸).

Figure 6

(a) Fluence requirements (absorption contrast, 10 nm resolution) for the four cellular components following the calculations for protein illustrated in Fig. 3, 100% efficiency. (b) Dose requirements following the calculations in Fig. 3, 100% efficiency.

Figure 7

Comparison of the dose for phase contrast with absorption contrast at 520 eV. Obtained by dividing the values in Fig. 5(b) with the value at 520 eV in Fig. 6(b).

Section 5.4: ‘For some components, much higher doses (e.g. a factor of 10–45 times more) are required for phase contrast imaging at the higher energies.’ Section 6, fourth paragraph: ‘The dose requirements for phase contrast at 4000 eV are between a factor of 2.2 (starch granule) and 45 (lipid droplet) higher than absorption contrast at 520 eV (Fig. 7 ▸). Mitochondrial membranes in absorption contrast at 522 eV would require a dose of 5.2 × 108 Gy for 10 nm resolution whereas a dose of 1.5 × 1010 Gy would be required in phase contrast at 2000 eV.’ The benefits of operating in the water window for thin specimens are still present although to a lesser extent than given in the paper. The error was identified when comparing the calculations with those of Schneider (1998 ▸) in which optimized phase contrast (exploiting amplitude and phase contrast) in the water window gave the lowest required dose for thin specimens. The corrections given above are consistent with this conclusion.
  3 in total

1.  Cryo X-ray microscopy with high spatial resolution in amplitude and phase contrast.

Authors:  G Schneider
Journal:  Ultramicroscopy       Date:  1998-11       Impact factor: 2.689

2.  Signal-to-noise and radiation exposure considerations in conventional and diffraction x-ray microscopy.

Authors:  Xiaojing Huang; Huijie Miao; Jan Steinbrener; Johanna Nelson; David Shapiro; Andrew Stewart; Joshua Turner; Chris Jacobsen
Journal:  Opt Express       Date:  2009-08-03       Impact factor: 3.894

3.  A comparison of absorption and phase contrast for X-ray imaging of biological cells.

Authors:  Colin Nave
Journal:  J Synchrotron Radiat       Date:  2018-08-27       Impact factor: 2.616

  3 in total
  1 in total

1.  The achievable resolution for X-ray imaging of cells and other soft biological material.

Authors:  Colin Nave
Journal:  IUCrJ       Date:  2020-03-07       Impact factor: 4.769

  1 in total

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