Literature DB >> 30839958

A comparison of mid-infrared spectral regions on accuracy of tissue classification.

Shachi Mittal1, Rohit Bhargava.   

Abstract

Infrared (IR) spectroscopic imaging, utilizing both the molecular and structural disease signatures, enables extensive profiling of tumors and their microenvironments. Here, we examine the relative merits of using either the fingerprint or the high frequency regions of the IR spectrum for tissue histopathology. We selected a complex model as a test case, evaluating both stromal and epithelial segmentation for various breast pathologies. IR spectral classification in each of these spectral windows is quantitatively assessed by estimating area under the curve (AUC) of the receiver operating characteristic curve (ROC) for pixel level accuracy and images for diagnostic ability. We found only small differences, though some that may be sufficiently important in diagnostic tasks to be clinically significant, between the two regions with the fingerprint region-based classifiers consistently emerging as more accurate. The work provides added evidence and comparison with fingerprint region, complex models, and previously untested tissue type (breast) - that the use of restricted spectral regions can provide high accuracy. Our study indicates that the fingerprint region is ideal for epithelial and stromal models to obtain high pixel level accuracies. Glass slides provide a limited spectral feature set but provides accurate information at the patient level.

Entities:  

Mesh:

Year:  2019        PMID: 30839958      PMCID: PMC6453738          DOI: 10.1039/c8an01782d

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  37 in total

1.  A correlation of FTIR spectra derived from prostate cancer biopsies with gleason grade and tumour stage.

Authors:  Ehsan Gazi; Matthew Baker; John Dwyer; Nicholas P Lockyer; Peter Gardner; Jonathan H Shanks; Roy S Reeve; Claire A Hart; Noel W Clarke; Michael D Brown
Journal:  Eur Urol       Date:  2006-03-31       Impact factor: 20.096

2.  Mie-type scattering and non-Beer-Lambert absorption behavior of human cells in infrared microspectroscopy.

Authors:  Brian Mohlenhoff; Melissa Romeo; Max Diem; Bayden R Wood
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

3.  Infrared spectroscopic imaging for histopathologic recognition.

Authors:  Daniel C Fernandez; Rohit Bhargava; Stephen M Hewitt; Ira W Levin
Journal:  Nat Biotechnol       Date:  2005-03-27       Impact factor: 54.908

4.  Estimating and correcting mie scattering in synchrotron-based microscopic fourier transform infrared spectra by extended multiplicative signal correction.

Authors:  A Kohler; J Sulé-Suso; G D Sockalingum; M Tobin; F Bahrami; Y Yang; J Pijanka; P Dumas; M Cotte; D G van Pittius; G Parkes; H Martens
Journal:  Appl Spectrosc       Date:  2008-03       Impact factor: 2.388

5.  Resonant Mie scattering (RMieS) correction of infrared spectra from highly scattering biological samples.

Authors:  Paul Bassan; Achim Kohler; Harald Martens; Joe Lee; Hugh J Byrne; Paul Dumas; Ehsan Gazi; Michael Brown; Noel Clarke; Peter Gardner
Journal:  Analyst       Date:  2009-12-15       Impact factor: 4.616

6.  Towards a practical Fourier transform infrared chemical imaging protocol for cancer histopathology.

Authors:  Rohit Bhargava
Journal:  Anal Bioanal Chem       Date:  2007-09-05       Impact factor: 4.142

7.  Diagnosing benign and malignant lesions in breast tissue sections by using IR-microspectroscopy.

Authors:  Heinz Fabian; Ngoc Anh Ngo Thi; Michael Eiden; Peter Lasch; Jürgen Schmitt; Dieter Naumann
Journal:  Biochim Biophys Acta       Date:  2006-05-23

Review 8.  High throughput assessment of cells and tissues: Bayesian classification of spectral metrics from infrared vibrational spectroscopic imaging data.

Authors:  Rohit Bhargava; Daniel C Fernandez; Stephen M Hewitt; Ira W Levin
Journal:  Biochim Biophys Acta       Date:  2006-05-17

9.  Investigating FTIR based histopathology for the diagnosis of prostate cancer.

Authors:  Matthew J Baker; Ehsan Gazi; Michael D Brown; Jonathan H Shanks; Noel W Clarke; Peter Gardner
Journal:  J Biophotonics       Date:  2009-02       Impact factor: 3.207

10.  Detection of breast micro-metastases in axillary lymph nodes by infrared micro-spectral imaging.

Authors:  Benjamin Bird; Kristi Bedrossian; Nora Laver; Milos Miljković; Melissa J Romeo; Max Diem
Journal:  Analyst       Date:  2009-04-01       Impact factor: 4.616

View more
  1 in total

1.  Hair Histology and Glycosaminoglycans Distribution Probed by Infrared Spectral Imaging: Focus on Heparan Sulfate Proteoglycan and Glypican-1 during Hair Growth Cycle.

Authors:  Charlie Colin-Pierre; Valérie Untereiner; Ganesh D Sockalingum; Nicolas Berthélémy; Louis Danoux; Vincent Bardey; Solène Mine; Christine Jeanmaire; Laurent Ramont; Stéphane Brézillon
Journal:  Biomolecules       Date:  2021-01-30
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.