| Literature DB >> 30838172 |
Jing Lin1,2, Yu Chen1,2,3, Wei-Feng Tang4, Chao Liu4, Sheng Zhang5, Zeng-Qing Guo1,2,3, Gang Chen3,6, Xiong-Wei Zheng3,6.
Abstract
Purpose: Functional variants in the peroxisome proliferator-activated receptor gamma (PPARG) and PPARG co-activator 1 (PPARGC1) family (e.g., PPARGC1A and PPARGC1B) genes were predicted to confer susceptibility to colorectal cancer (CRC). The aim of the present study was to explore the relationship between PPARG, PPARGC1A, PPARGC1B polymorphism and the risk of CRC. Patients and methods: We conducted a case-control study with 1,003 CRC cases and 1,303 controls. We selected the PPARG rs3856806 C>T, PPARGC1A rs2970847 C>T, rs8192678 C>T, rs3736265 G>A and PPARGC1B rs7732671 G>C and rs17572019 G>A SNPs to assess the relationship between PPARG, PPARGC1A, PPARGC1B their variants and risk of CRC.Entities:
Keywords: PPARG; PPARGC1A; PPARGC1B; colorectal cancer; polymorphism; risk
Year: 2019 PMID: 30838172 PMCID: PMC6389672 DOI: 10.3389/fonc.2019.00063
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Distribution of selected characteristics in CRC cases and controls.
| Age (years) | 62, IQR (53–70) | 61, IQR (55–68) | |||
| Age (years) | 0.605 | ||||
| < 61 | 451 | 44.97 | 600 | 46.05 | |
| ≥61 | 552 | 55.03 | 703 | 53.95 | |
| 0.867 | |||||
| Male | 620 | 61.81 | 801 | 61.47 | |
| Female | 383 | 38.19 | 502 | 38.53 | |
| Never | 744 | 74.18 | 1038 | 79.66 | |
| Ever | 259 | 25.82 | 265 | 20.34 | |
| Never | 829 | 82.65 | 1,167 | 89.56 | |
| Ever | 174 | 17.35 | 136 | 10.44 | |
| < 24 | 670 | 66.80 | 688 | 52.80 | |
| ≥ 24 | 333 | 33.20 | 615 | 47.20 | |
| Colon cancer | 431 | 42.97 | |||
| Rectum cancer | 572 | 57.03 | |||
Two-sided χ.
IQR: interquartile range.
Bold values are statistically significant (P < 0.05).
BMI: body mass index.
Primary information for PPARG rs3856806 C>T, PPARGC1A rs2970847 C>T, rs8192678 C>T, rs3736265 G>A, and PPARGC1B rs7732671 G>C and rs17572019 G>A polymorphisms.
| Chromosome | 3 | 4 | 4 | 4 | 5 | 5 |
| Function | coding-synonymous | coding-synonymous | missense | missense | missense | missense |
| Chr Pos (NCBI Build 38) | 12434058 | 23814301 | 23813084 | 23814039 | 149832680 | 149832908 |
| MAF | 0.25 | 0.28 | 0.23 | 0.35 | 0.09 | 0.07 |
| MAF in our controls ( | 0.22 | 0.22 | 0.15 | 0.44 | 0.06 | 0.06 |
| 0.143 | 0.925 | 0.059 | 0.800 | 0.970 | 0.372 | |
| Genotyping method | SNPscan | SNPscan | SNPscan | SNPscan | SNPscan | SNPscan |
| % Genotyping value | 98.87% | 98.87% | 98.66% | 98.87% | 98.87% | 98.87% |
MAF: minor allele frequency.
.
HWE: Hardy–Weinberg equilibrium.
Logistic regression analyses of associations between PPARG rs3856806 C>T, PPARGC1A rs2970847 C>T, rs8192678 C>T, rs3736265 G>A, and PPARGC1B rs7732671 G>C and rs17572019 G>A polymorphisms and risk of CRC.
| CC | 544 | 55.51 | 789 | 60.69 | 1.00 | 1.00 | ||
| CT | 374 | 38.16 | 459 | 35.31 | 1.14(0.96–1.35) | 0.145 | 1.16(0.97-1.39) | 0.095 |
| TT | 62 | 6.33 | 52 | 4.00 | ||||
| CT+TT | 436 | 44.49 | 511 | 39.31 | ||||
| CC+CT | 918 | 93.67 | 1,248 | 96.00 | 1.00 | 1.00 | ||
| TT | 62 | 6.33 | 52 | 4.00 | ||||
| T allele | 498 | 25.41 | 563 | 21.65 | ||||
| CC | 593 | 60.51 | 788 | 60.62 | 1.00 | 1.00 | ||
| CT | 344 | 35.10 | 449 | 34.54 | 0.98(0.83–1.17) | 0.855 | 0.97(0.81–1.16) | 0.743 |
| TT | 43 | 4.39 | 63 | 4.85 | 0.88(0.59–1.31) | 0.520 | 0.92(0.61–1.38) | 0.673 |
| CT+TT | 387 | 39.49 | 512 | 39.38 | 1.00(0.85–1.19) | 0.959 | 1.00 (0.84–1.19) | 0.985 |
| CC+CT | 937 | 95.61 | 1,237 | 95.15 | 1.00 | 1.00 | ||
| TT | 43 | 4.39 | 63 | 4.85 | 0.90(0.61–1.34) | 0.610 | 0.95(0.63–1.42) | 0.787 |
| T allele | 430 | 21.94 | 575 | 22.12 | ||||
| GG | 685 | 70.11 | 936 | 72.11 | 1.00 | |||
| GA | 260 | 26.61 | 322 | 24.81 | 1.07(0.88–1.29) | 0.493 | 1.06(0.87–1.29) | 0.550 |
| AA | 32 | 3.28 | 40 | 3.08 | 1.06(0.66–1.70) | 0.813 | 1.04(0.64–1.68) | 0.885 |
| GA + AA | 292 | 29.89 | 362 | 27.89 | 1.10(0.92–1.32) | 0.297 | 1.09(0.91–1.31) | 0.357 |
| GG+GA | 945 | 96.72 | 1,258 | 96.92 | 1.00 | 1.00 | ||
| AA | 32 | 3.28 | 40 | 3.08 | 1.07(0.66–1.71) | 0.793 | 1.05(0.65–1.69) | 0.854 |
| A allele | 324 | 16.58 | 402 | 15.49 | ||||
| CC | 344 | 35.10 | 408 | 31.38 | 1.00 | 1.00 | ||
| CT | 454 | 46.33 | 645 | 49.62 | ||||
| TT | 182 | 18.57 | 247 | 19.00 | 0.83(0.65–1.05) | 0.113 | 0.85(0.66–1.08) | 0.171 |
| CT+TT | 636 | 64.90 | 892 | 68.62 | 0.85(0.71–1.01) | 0.062 | 0.87(0.73–1.05) | 0.139 |
| CC+CT | 798 | 81.43 | 1,053 | 81.00 | 1.00 | 1.00 | ||
| TT | 182 | 18.57 | 247 | 19.00 | 0.97(0.79–1.20) | 0.796 | 0.98(0.79–1.21) | 0.832 |
| T allele | 818 | 41.73 | 1,139 | 43.81 | ||||
| GG | 863 | 88.06 | 1,145 | 88.08 | 1.00 | 1.00 | ||
| GC | 113 | 11.53 | 150 | 11.54 | 0.98(0.75–1.27) | 0.855 | 0.99(0.76–1.29) | 0.924 |
| CC | 4 | 0.41 | 5 | 0.38 | 1.04(0.28–3.87) | 0.957 | 1.03(0.27–3.88) | 0.967 |
| GC+CC | 117 | 11.94 | 155 | 11.92 | 1.00(0.78–1.29) | 0.991 | 1.01(0.78–1.31) | 0.927 |
| GG+GC | 976 | 99.59 | 1,295 | 99.62 | 1.00 | 1.00 | ||
| CC | 4 | 0.41 | 5 | 0.38 | 1.06(0.28–3.96) | 0.929 | 1.05(0.28–3.96) | 0.946 |
| C allele | 121 | 6.17 | 160 | 6.15 | ||||
| GG | 862 | 87.96 | 1,144 | 88.00 | 1.00 | |||
| GA | 115 | 11.73 | 149 | 11.46 | 1.00(0.77–1.30) | 0.998 | 1.02(0.79–1.33) | 0.877 |
| AA | 3 | 0.31 | 7 | 0.54 | 0.56(0.14–2.15) | 0.395 | 0.47(0.12–1.84) | 0.276 |
| GA+AA | 118 | 12.04 | 156 | 12.00 | 1.00(0.78–1.30) | 0.976 | 1.02(0.78–1.32) | 0.900 |
| GG+GA | 977 | 99.69 | 1,293 | 99.46 | 1.00 | 1.00 | ||
| AA | 3 | 0.31 | 7 | 0.54 | 0.57(0.15–2.20) | 0.412 | 0.48(0.12–1.86) | 0.286 |
| A allele | 121 | 6.17 | 163 | 6.27 | ||||
Adjusted for age, sex, smoking status, alcohol use and BMI status.
Bold values are statistically significant (P < 0.05).
Stratified analyses between PPARG rs3856806 C>T polymorphism and CRC risk by sex, age, BMI, smoking status, and alcohol consumption.
| Male | 188/382 | 84/183 | 15/22 | 1.00 | 1.13(0.90–1.41); | 1.25(1.01–1.56); | ||
| Female | 146/288 | 79/135 | 9/19 | 1.00 | 1.23(0.92–1.64); | 1.25(0.66–2.37); | 1.26(0.96–1.67); | 1.18(0.63–2.21); |
| < 61 | 155/309 | 71/152 | 12/14 | 1.00 | 1.06(0.81–1.38); | 1.77(0.98–3.21); | 1.15(0.89–1.49); | 1.76(0.98–3.16); |
| ≥61 | 179/361 | 92/166 | 12/27 | 1.00 | 1.27(1.00–1.61); | 1.49(0.88–2.50); | 1.40(0.84–2.33); | |
| Never | 201/541 | 103/252 | 13/34 | 1.00 | 1.20(0.98–1.47); | 1.48(0.95–2.30); | 1.41(0.91–2.17); | |
| Ever | 133/129 | 60/66 | 11/7 | 1.00 | 1.03(0.71–1.48); | 2.09(0.87–5.05); | 1.17(0.82–1.67); | 2.13(0.89–5.09); |
| Never | 283/623 | 139/287 | 22/38 | 1.00 | 1.20(0.99–1.45); | 1.48(0.97–2.26); | 1.41(0.93–2.15); | |
| Ever | 51/47 | 24/31 | 2/3 | 1.00 | 1.01(0.62–1.65); | 2.59(0.89–7.54); | 1.20(0.75–1.92); | 2.62(0.91–7.52); |
| < 24 | 210/353 | 107/171 | 20/22 | 1.00 | 1.13(0.90–1.42); | 1.26(0.78–2.03); | 1.18(0.95–1.47); | 1.23(0.77–1.96); |
| ≥24 | 124/317 | 56/147 | 4/19 | 1.00 | 1.21(0.92–1.61); | |||
For PPARG rs3856806 C>T, the genotyping was successful in 980 (97.71%) CRC cases, and 1300 (99.77%) controls.
Adjusted for multiple comparisons in a logistic regression model (age stratified analysis: sex, BMI, smoking status and alcohol consumption adjusted; sex stratified analysis: age, BMI, smoking status and alcohol consumption adjusted; BMI stratified analysis: age, sex, smoking status and alcohol consumption adjusted; smoking stratified analysis: age, sex, BMI and alcohol consumption adjusted and drinking stratified analysis: age, sex, BMI and smoking status adjusted).
Bold values are statistically significant (P < 0.05).
Stratified analyses between PPARG rs3856806 C>T polymorphism and CRC risk by site of tumor.
| CC | 789 | 60.69 | 228 | 53.90 | 1.00 | 1.00 | 316 | 56.72 | 1.00 | 1.00 | ||||
| CT | 459 | 35.31 | 170 | 40.19 | 1.24(0.99–1.56) | 0.062 | 204 | 36.62 | 1.06(0.86–1.31) | 0.564 | 1.08(0.88–1.34) | 0.459 | ||
| TT | 52 | 4.00 | 25 | 5.91 | 1.61(0.98–2.66) | 0.060 | 1.54(0.93–2.55) | 0.093 | 37 | 6.64 | ||||
| CT+TT | 511 | 39.31 | 195 | 46.10 | 241 | 43.27 | 1.18(0.96–1.44) | 0.111 | 1.19(0.97–1.46) | 0.099 | ||||
| CC+CT | 1,248 | 96.00 | 398 | 94.09 | 1.00 | 1.00 | 520 | 93.36 | 1.00 | 1.00 | ||||
| TT | 52 | 4.00 | 25 | 5.91 | 1.51(0.92–2.46) | 0.101 | 1.43(0.87–2.34) | 0.160 | 37 | 6.64 | ||||
| T allele | 563 | 21.65 | 220 | 26.00 | 278 | 24.96 | ||||||||
Adjusted for age, sex, smoking status, alcohol use and BMI status.
Bold values are statistically significant (P < 0.05).