| Literature DB >> 30838017 |
Amanat Ali1, Bincy Baby1, Ranjit Vijayan1.
Abstract
Camels have an important role in the lives of human beings, especially in arid regions, due to their multipurpose role and unique ability to adapt to harsh conditions. In spite of its enormous economic, cultural, and biological importance, the camel genome has not been widely studied. The size of camel genome is roughly 2.38 GB, containing over 20,000 genes. The unusual genetic makeup of the camel is the main reason behind its ability to survive under extreme environmental conditions. The camel genome harbors several unique variations which are being investigated for the treatment of several disorders. Various natural products from camels have also been tested and prescribed as adjunct therapy to control the progression of ailments. Interestingly, the camel employs unique immunological and molecular mechanisms against pathogenic agents and pathological conditions. Here, we broadly review camel classification, distribution and breed as well as recent progress in the determination of the camel genome, its size, genetic distribution, response to various physiological conditions, immunogenetics and the medicinal potential of camel gene products.Entities:
Keywords: adaptations; antibodies; anticancer; breeds; camel genome; immunogenomics
Year: 2019 PMID: 30838017 PMCID: PMC6389616 DOI: 10.3389/fgene.2019.00017
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1Classification of camels.
FIGURE 2Camel distribution by region.
Top 20 countries with camel population.
| Sl. No | Country | Continent | Population (in millions) |
|---|---|---|---|
| (1) | Somalia | Africa | 7.15 |
| (2) | Sudan | Africa | 4.79 |
| (3) | Kenya | Africa | 2.93 |
| (4) | Niger | Africa | 1.72 |
| (5) | Chad | Africa | 1.55 |
| (6) | Mauritania | Africa | 1.39 |
| (7) | Ethiopia | Africa | 1.16 |
| (8) | Pakistan | Asia | 1.02 |
| (9) | Mali | Africa | 0.97 |
| (10) | Yemen | Asia | 0.46 |
| (11) | United Arab Emirates | Asia | 0.40 |
| (12) | India | Asia | 0.38 |
| (13) | Eritrea | Africa | 0.37 |
| (14) | Algeria | Africa | 0.35 |
| (15) | Mongolia | Asia | 0.34 |
| (16) | China | Asia | 0.31 |
| (17) | Nigeria | Africa | 0.28 |
| (18) | Saudi Arabia | Asia | 0.27 |
| (19) | Oman | Asia | 0.25 |
| (20) | Tunisia | Africa | 0.24 |
Popular camel breeds by country.
| Sl. No. | Country | Breed | Coat color | Potential use | Reference |
|---|---|---|---|---|---|
| (1) | Algeria | Azawad | Light/white coat color | Racing camel | |
| (2) | Ouled Sidi Cheikh | Dark coat color | Dairy camel | ||
| (3) | Rguibi | Clear/white coat color | Dairy camel | ||
| (4) | Barbari | Various coat color | Dairy camel | ||
| (5) | Regbi | Light color coat | Racing camel | ||
| (6) | Targui | White/clear coat color | Racing camel | ||
| (7) | Hamra | Reddish brown coat color | Multipurpose camel | ||
| (8) | China | Alashan | Apricot yellow, purple, brown, and white color coat | Multipurpose camel | |
| (9) | Qinghai | Sandy beige and puce coat color | Dairy camel | ||
| (10) | Tarim | Brown and yellow coat color | Multipurpose camel | ||
| (11) | Shunite | Apricot yellow and purple red coat color | Multipurpose camel | ||
| (12) | Xinjiang | Brown and yellow coat color | Multipurpose camel | ||
| (13) | Egypt | Falahi | Various coat color | Transportation and agricultural purpose | |
| (14) | Maghrabi | Various coat color | Dairy camel | ||
| (15) | Mowalled | Various coat color | Multipurpose camel | ||
| (16) | Somali | Off-white coat color | Racing camel | ||
| (17) | Sudani | Various coat color | Racing camel | ||
| (18) | India | Bikaneri | Light brown to dark brown and dark red to brown red coat color | Multipurpose camel | |
| (19) | Jaisalmeri | Light brown | Racing camel | ||
| (20) | Kachchhi | Brown to dark brown coat color | Dairy camel | ||
| (21) | Mewari | Light brown to dark brown, and some have white coat color | Multipurpose camel | ||
| (22) | Malvi | Off-white coat color | Multipurpose camel | ||
| (23) | Mongolia | Hos Zogdort | Various coat color | Multipurpose camel | |
| (24) | Galbiin Gobiin Ulaan | Various coat color | Multipurpose camel | ||
| (25) | Galba Gobi | Red coat color | Dairy camel | ||
| (26) | Khaniin Kheziin | Brown coat color | Dairy camel | ||
| (27) | Pakistan | Brela | Blackish brown to light brown coat color | Dairy camel | |
| (28) | Kohi | White coat color | Multipurpose camel | ||
| (29) | Marrecha | Blackish brown to light brown coat color | Multipurpose and racing camel | ||
| (30) | Kutchi | Brown to dark brown coat color | Dairy and racing camel | ||
| (31) | Pahwali | Dark brown to black | Multipurpose camel | ||
| (32) | Peshin | Light brown to dark brown | Dairy camel | ||
| (33) | Saudi Arabia | Aouadi | Red to white coat color | Multipurpose vocation camel | |
| (34) | Asail | Yellow to brown color | Racing camel | ||
| (35) | Awrk | White coat color | Multipurpose vocation camel | ||
| (36) | Hadhana | Light brown coat color | Multipurpose vocation camel | ||
| (37) | Hamor | Brown coat color | Dairy camel | ||
| (38) | Maghateer | White coat color | Multipurpose vocation camel | ||
| (39) | Majaheem | Black coat color | Dairy camel | ||
| (40) | Safrah | Dark brown coat color | Dairy camel | ||
| (41) | Saheli | Red coat color | Multipurpose vocation camel | ||
| (42) | Shaele | Gray coat color | Dairy camel | ||
| (43) | Shageh | Gray coat color | Racing camel | ||
| (44) | Sofor | Dark brown coat color | Dairy camel | ||
| (45) | Waddah | White coat color | Dairy camel | ||
| (46) | Zargeh | Blue-gray coat color | Racing camel | ||
| (47) | Somalia | Eyddimo | White coat color | Multipurpose camel | |
| (48) | Hoor | White coat color | Dairy camel | ||
| (49) | Sifdar | Gray to reddish coat color | Multipurpose camel | ||
| (50) | Sudan | Al Anafi | Yellowish white coat color | Racing camel | |
| (51) | Al Bishari | White or yellowish coat color | Racing camel | ||
| (52) | Al Arabi | Sandy gray, or fawn coat color | Dairy camel | ||
| (53) | Ould Sidi Al Sheikh | Light coat color | Dairy camel | ||
| (54) | Kabbashi | Red, gray, and yellow coat color | Dairy camel | ||
| (55) | Kenani | Dark brown, gray, and yellowish coat color | Multipurpose camel | ||
| (56) | Lahwee | Brown, red, and yellowish coat color | Multipurpose camel | ||
| (57) | Piebald | White and solid (black, brown, tawny, red, or gray) coat color | Dairy and aesthetics purpose camel | ||
| (58) | Rashaidi | Dark gray and pinkish red coat color | Dairy camel | ||
| (59) | Shallageea | Various color coat | Dairy camel |
Genomic comparison of bactrian camel and other mammals.
| Species | Short interspersed elements (%) | Long interspersed elements (%) | Genome size (Gb) | Number of syntenic blocks |
|---|---|---|---|---|
| Bactrian camel | 4 | 19 | 2.38 | 1,100 |
| Cattle | 18 | 23 | 2.9 | 1,121 |
| Horse | 7 | 20 | 2.7 | 1,005 |
| Human | 13 | 21 | 3.2 | 1,044 |
| Mouse | 8 | 19 | 2.5 | 1,070 |
Genomic comparison of different camel species.
| Genomic characteristic feature | Bactrian camel | Dromedary camel | Alpaca camel | Reference |
|---|---|---|---|---|
| Number of genes | 20,251 | 20,714 | 20,864 | |
| GC content (%) | 41.3 | 41.2 | 41.4 | |
| Repeat content (%) | 30.4 | 28.4 | 32.1 | |
| Expanded genes | 183 | 373 | 501 | |
| Contracted genes | 753 | 853 | 2189 | |
| Non-coding RNA gene-copy number | 1942 | 2209 | 2328 | |
| Species specific homologous gene families | 156 | 153 | 296 | |
| Heterozygote rates | 1.16 × 10-3 | 0.74 × 10-3 | 2.66 × 10-3 |
Regulation of camel genes under stress.
| Camel physiology | Gene/Protein | Function/protein | Action | Reference |
|---|---|---|---|---|
| Oxidative stress | Nuclear factor, erythroid 2 like 2 (NFE2L2) | Antioxidant | Up-regulated | |
| Microsomal glutathione S-transferase 2 (MGST2) | Antioxidant | Up-regulated | ||
| Water restricted conditions | Epithelial sodium channel (ENaC) | Controls the reabsorption of sodium in kidney | Up-regulated | |
| Sodium/potassium transporting ATPase (Na+/K+-ATPase) | Sodium/potassium transporting ATPase | Up-regulated | ||
| Aquaporin 1 (AQP1-3) | Water channel protein permits passive transport of water in kidneys | Up-regulated | ||
| Nuclear factor of activated T-cells 5 (NFAT5) | Regulates gene expressions induced by osmotic stress | Down- regulated | ||
| Solute carrier family 5 member 3 (SLC5A3) also known as (SMIT) | Exhibit transporter activity and myo-inositol: sodium symporter activity | Down-regulated | ||
| Solute carrier family 6 member 6 (SLC6A6) | Regulates a family of sodium and chloride-ion dependent transporters | Down- regulated | ||
| Betaine/GABA transporter-1 (BGT1) | Regulates sodium symporter activity and gamma-aminobutyric acid | Down-regulated | ||
| Glucose transporter 1 (GLUT1) | Transport glucose into cells from blood | Up-regulated | ||
| Aldose reductase (AR) | Catalyzes reduction of glucose to sorbitol | Up-regulated | ||
| Sorbitol dehydrogenase (SDH) | Accumulation of sorbitol serves as a source of energy in WR | Down-regulated | ||
| Heart physiology | Alpha actinin 2 | Coupling of Ca2+ -activated K+ channel to L type Ca2+ channel | Up-regulated | |
| Alpha B-crystallin | Small heat shock protein. Cytoprotective | Up-regulated | ||
| ATP synthase beta subunit | Proton leakage in cardiac muscles | Down-regulated | ||
| Isocitrate dehydrogenase | Up-regulated | |||
| Liver physiology | Guanidinoacetate methyltransferase | Creatine phosphate synthesis and Antioxidant | Up-regulated | |
| 14-3-3protein epsilon (14-3-3E) (Mitochondrial import stimulation factor L subunit) (MSF L) isoform 1 | Control protein kinases and other cellular events including autophagy and tumorigenesis | Up-regulated | ||
| Glutathione peroxidase | Antioxidant and prevents heat-induced and acid-induced amorphous aggregation of proteins | Up-regulated | ||
| Hump fat physiology | Cytochrome B | Electron carrier | Up-regulated | |
| Galectin-1 | Control basic cellular process | Up-regulated | ||
| β-galactoside-binding soluble 1 (L-14-I) | Up-regulated | |||
| Brain physiology | β-Synuclein | Prevent neurodegeneration and inhibiting the fibrillation of α-synuclein | Up-regulated | |
| Thermal and dehydration stress | Heat shock protein 27, 65, and 73 | Provide defense against dehydration or thermal stress in arid environments. | Up-regulated |
Single nucleotide polymorphisms (SNPs) linked with dairy potential in camels.
| Gene name | SNP position | Potential influence | Reference |
|---|---|---|---|
| β-casein (CSN2) | 2126A>G 6040G>A | Associated with milk production and composition traits | |
| αs1-casein (CSN1S1) | 942G>T | ||
| Growth hormone (GH) gene | 419C>T450T>C | Increase body weightIncrease body weight | |
| Myogenic factors 5 gene (MYF5) | 377A>T | Thickness of longissimus dorsi muscle |
FIGURE 3Structural models of antibodies.
Medical uses of VHHs derived camel antibodies.
| Receptor/Protein/Antigen | Action | Medical use | Reference |
|---|---|---|---|
| Protein kinase C | Increases or decreases the activity | Type II diabetes mellitus | |
| Lysozyme aggregation | Inhibitory | Parkinson’s and Alzheimer’s disease | |
| Poliovirus type 1 Sabin strain particles | Inhibit viral replication | Antiviral | |
| Tumor associated antigen (TAA) | Anti-idiotypic vaccines | High risk cancer patients | |
| Anti-complementary activity | Increase the activity which leads to decrease adverse reactions | Snake or insect antiserum | |
| Tumor specific antigen | Senses or induces conformational changes | Prostate cancer | |
| Tumor specific antigen | Tumor immunolabelling | Diagnosis of tumors | |
| Dipeptidyl peptidase like 6 protein | Nanobody based tracer targeting DPP6 | Imaging of human pancreatic endocrine cells | |
| Macrophage mannose receptor | Nanobody based tracer targeting macrophage mannose receptor | Imaging of joint inflammation | |
| Vascular cell adhesion molecule 1 (VCAM1) | Nanobody based targeting VCAM1 | Imaging of atherosclerotic lesions | |
| Human epidermal growth factor receptor 2 (HER2) | Nanobody based targeting HER2 | Imaging of HER2 receptors expression in cancer | |
| CXCR4 nanobodies | Anti-proliferation, anti-metastatic and anti-angiogenic | Anti-HIV-1 entry activity | |
| CXCR7 nanobodies | Anti-proliferation, anti-metastatic and anti-angiogenic | Head and neck cancer | |
| Tumor necrosis factor alpha | Inhibitory | Rheumatoid arthritis (RA) | |
| FcgammaRIII killer cells | Increases their recruitment | Detection and destruction of tumor cells | |
| IL-6 receptor | Inhibitory | Rheumatoid arthritis | |
| Hepatocyte growth receptor | Nanobody based targeting hepatocyte growth receptor | Anticancer | |
| Epidermal growth factor receptor (EGFR) | Nanobody based targeting EGFR | Anticancer | |
| vascular endothelial growth factor receptor-2 (VEGFR2) | Nanobody based targeting VEGFR2 | Anticancer | |
| Carcinoembryonic antigen (CEA) | Anti-CEA nanobody CEA5 | ||
| Capsid Protein L1 | Nanobody based targeting major capsid protein L1 | Cervical cancer | |
| Death receptor 5 (DR5) | DR5 nanobodies lead to caspase activation | Antitumor |
Action of camel urine on proteins.
| Effect of | |||
|---|---|---|---|
| Protein | Function | camel urine | Reference |
| Cyclin D1 | Prooncogene | Inhibitory effect | |
| Beta-catenin | Transcription factor | Inhibitory effect | |
| Bcl-2 | Antiapoptotic protein | Inhibitory effect | |
| Survivin | Antiapoptotic protein | Inhibitory effect | |
| Cyclin- dependent kinase inhibitor p21 | Antiproliferative activity | Excitatory effect | |
| Th2 cytokines Interleukin-4, Interleukin-10 | Immunosuppressive and tumor stimulating growth factors | Inhibitory effect | |
| Interleukin-6 | Potent growth factor cytokine | Inhibitory effect | |
| Interleukin-1β | Proinflammatory cytokine | Inhibitory effect | |
| Interleukin-4 | Proinflammatory cytokine | Inhibitory effect | |
| Transforming growth factor-β (TGF- β) | Proangiogenic and proinflammatory cytokine | Inhibitory effect | |
| Tumor necrosis factor-α (TNF- α) | Proangiogenic and proinflammatory cytokine | Inhibitory effect | |
| The chemokine (C-C motif) ligand 2 (CCL2) | Proangiogenic and proinflammatory cytokine | Inhibitory effect | |
| vascular endothelial growth factor (VEGF) | Proangiogenic mediator | Inhibitory effect | |
| Caspase 3 | Proapoptotic protein | Excitatory effect | |
| Bax | Proapoptotic protein | Excitatory effect | |
| CD3+/CD4+ T helper cells | Regulate immune response | Excitatory effect | |
| CD3+/CD8+ cytolytic T cells | Regulate immune response | Excitatory effect | |
| Nuclear factor (NF-κβ) | Stimulates proliferation, proinflammatory and antiapoptotic factor | Inhibitory effect | |
| Granulocyte-macrophage colony-stimulating factor (GM-CSF) | Proangiogenic cytokine | Inhibitory effect | |
| Intercellular adhesion molecule 1 (ICAM1) | Proinflammatory and prometastatic protein | Inhibitory effect | |
| Quinone oxidoreductase 1 | Cancer protective gene | Excitatory effect | |
| Leptin | Involved in proliferation and metastasis | Inhibitory effect | |
| Cytochrome P450 1a1 | Prooncogene | Inhibitory effect |
FIGURE 4Reported direct and indirect effect of camel urine on proteins involved in cancer pathways. (+) represents activation and (–) represents the inhibition of the protein by camel urine.