Literature DB >> 30832757

The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project: providing services to taxonomists for standard genome sequencing and annotation.

Linhuan Wu1,2, Juncai Ma1,2.   

Abstract

The World Federation of Culture Collections and the World Data Center for Microorganisms (wdcm) initiated an international community-led project to sequence and annotate newly described prokaryotic taxa. This sequencing project aims to cooperate with international culture collections and the International Journal of Systematic and Evolutionary Microbiology and contribute to the expansion of whole genome sequencing databases for type strains. It will provide global microbial taxonomists with free standard genome sequencing and annotation services. Taxonomists are encouraged to contact the wdcm and participant culture collections to submit a type strain sequencing proposal.

Entities:  

Keywords:  culture collections; genome sequencing; prokaryote; type strain

Mesh:

Year:  2019        PMID: 30832757     DOI: 10.1099/ijsem.0.003276

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  17 in total

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Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

2.  Mesobacillus aurantius sp. nov., isolated from an orange-colored pond near a solar saltern.

Authors:  Anusha Rai; N Smita; A Shabbir; U Jagadeeshwari; T Keertana; Ch Sasikala; Ch V Ramana
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3.  Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA.

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Journal:  Phytobiomes J       Date:  2020-03-23

4.  Neoroseomonas marina sp. nov., Isolated from a Beach Sand.

Authors:  Anusha Rai; Jagadeeshwari Uppada; Deepshikha Gupta; Smita Nandardhane; Ipsita Sahu; Sasikala Chintalapati; Venkata Ramana Chintalapati
Journal:  Curr Microbiol       Date:  2022-06-29       Impact factor: 2.343

5.  Draft Genome Sequences of the Kocuria subflava Type Strain KCTC 39547 and Kocuria sp. Strain JC486, a Newly Isolated Strain from a Wild Ass Sanctuary in Gujarat, India.

Authors:  Jagadeeshwari Uppada; Sasikala Chintalapati; Karthika K; Venkata Ramana Chintapati
Journal:  Microbiol Resour Announc       Date:  2022-09-01

6.  Constructing a Defined Starter for Multispecies Vinegar Fermentation via Evaluation of the Vitality and Dominance of Functional Microbes in an Autochthonous Starter.

Authors:  Ting Huang; Zhen-Ming Lu; Ming-Ye Peng; Li-Juan Chai; Xiao-Juan Zhang; Jin-Song Shi; Qi Li; Zheng-Hong Xu
Journal:  Appl Environ Microbiol       Date:  2021-11-24       Impact factor: 5.005

7.  Sabulicella rubraurantiaca gen. nov., sp. nov., a new member of the family Acetobacteraceae, isolated from desert soil.

Authors:  Zhi-Liang Lin; Shuai Li; Qi-Chuang Wei; Wen-Hui Lian; Chun-Yan Lu; Lu Xu; Li-Nan Huang; Lei Dong; Wen-Jun Li
Journal:  Arch Microbiol       Date:  2021-12-04       Impact factor: 2.552

8.  A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index.

Authors:  R A Barco; G M Garrity; J J Scott; J P Amend; K H Nealson; D Emerson
Journal:  mBio       Date:  2020-01-14       Impact factor: 7.867

9.  Defining the Rhizobium leguminosarum Species Complex.

Authors:  J Peter W Young; Sara Moeskjær; Alexey Afonin; Praveen Rahi; Marta Maluk; Euan K James; Maria Izabel A Cavassim; M Harun-Or Rashid; Aregu Amsalu Aserse; Benjamin J Perry; En Tao Wang; Encarna Velázquez; Evgeny E Andronov; Anastasia Tampakaki; José David Flores Félix; Raúl Rivas González; Sameh H Youseif; Marc Lepetit; Stéphane Boivin; Beatriz Jorrin; Gregory J Kenicer; Álvaro Peix; Michael F Hynes; Martha Helena Ramírez-Bahena; Arvind Gulati; Chang-Fu Tian
Journal:  Genes (Basel)       Date:  2021-01-18       Impact factor: 4.096

10.  gcType: a high-quality type strain genome database for microbial phylogenetic and functional research.

Authors:  Wenyu Shi; Qinglan Sun; Guomei Fan; Sugawara Hideaki; Ohkuma Moriya; Takashi Itoh; Yuguang Zhou; Man Cai; Song-Gun Kim; Jung-Sook Lee; Ivo Sedlacek; David R Arahal; Teresa Lucena; Hiroko Kawasaki; Lyudmila Evtushenko; Bevan S Weir; Sarah Alexander; Dlauchy Dénes; Somboon Tanasupawat; Lily Eurwilaichitr; Supawadee Ingsriswang; Bruno Gomez-Gil; Manzour H Hazbón; Marco A Riojas; Chatrudee Suwannachart; Su Yao; Peter Vandamme; Fang Peng; Zenghui Chen; Dongmei Liu; Xiuqiang Sun; Xinjiao Zhang; Yuanchun Zhou; Zhen Meng; Linhuan Wu; Juncai Ma
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

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