| Literature DB >> 30828987 |
Junhong Cai1, Kaiying Cui2, Fanglin Niu3,4, Tianbo Jin3,4, Sizhe Huang2, Ying Zhang2, Shan Bao2.
Abstract
BACKGROUND: Endometrial cancer is the most common gynaecological malignancy. Cytokines gene may be important in endometrial cancer development. This study sought to investigate whether the IL4, IL6 two gene genetic variants were associated with susceptibility to endometrial cancer (EC) in Hainan Chinese Han women by a hospital-based study.Entities:
Keywords: Case-control study; IL6; endometrial cancer; genetic polymorphisms
Mesh:
Substances:
Year: 2019 PMID: 30828987 PMCID: PMC6465666 DOI: 10.1002/mgg3.600
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
PCR primers
| SNP | 1st‐PCR primer sequences | 2st‐PCR primer sequences | UEP sequences |
|---|---|---|---|
| rs2243250 | ACGTTGGATGTAACAGGCAGACTCTCCTAC | ACGTTGGATGTGATACGACCTGTCCTTCTC | TAAACTTGGGAGAACATTGT |
| rs2227284 | ACGTTGGATGGATGAAGGGTTTCTTGGGTG | ACGTTGGATGCATTATGGAACTCTCTGTAG | AGCTCTCTTTGGTAAATAGGAAAT |
| rs2243267 | ACGTTGGATGTATAGTTTACTCACTGCCGC | ACGTTGGATGAGAAACGCATTGCACAGTGG | cccaCTATCGTGGCAGATTTTTG |
| rs2243270 | ACGTTGGATGCAGTATCAACAGTTGACCCC | ACGTTGGATGACATTCACTCATCCCACCAG | CACCAGCCAGAGGTAACTA |
| rs2243283 | ACGTTGGATGAAACAGTACTGACCATCGCC | ACGTTGGATGTGCTGACAGATCGGTTGTAG | tGGGGAGGAAAAGATGAC |
| rs2243289 | ACGTTGGATGGGCTTGATCAAGTAGACAGG | ACGTTGGATGTCACAGGACAGGAATTCTGC | tatCTTGCATTGGTAAGCATTTGTC |
| rs1800796 | ACGTTGGATGTCTTCTGTGTTCTGGCTCTC | ACGTTGGATGTGGAGACGCCTTGAAGTAAC | ccccGCAGTTCTACAACAGCC |
| rs2069837 | ACGTTGGATGTCTCCAAAAACCTTCCTTGC | ACGTTGGATGCTGCTGGAACATTCTATGGC | GTGTGCCAGGCACTTTA |
| rs1524107 | ACGTTGGATGGGATGCCAATGAGTTGTAGC | ACGTTGGATGAACAAACACCACTAGAGGGC | gAACCACAGCCAGGAAA |
| rs2066992 | ACGTTGGATGTAGAGACTTTCCTGGCTGTG | ACGTTGGATGTGTTATCACCTAAGTGTCCC | ccacCAAACACCACTAGAGGG |
| rs2069840 | ACGTTGGATGCCAGGCAGCAACAAAAAGTG | ACGTTGGATGCTGTCCAAGAATAAACTGCC | caTGCCTTTAAAAAAGCTTGAA |
Basic information of candidate SNPs in this study
| SNP | Chr | Allele(A | Gene | MAF(case) | MAF(control) | P‐HWE | OR | 95% CI |
|
|---|---|---|---|---|---|---|---|---|---|
| rs2243250 | 5q31.1 | C/T | IL4 | 0.216 | 0.253 | 0.352 | 0.82 | 0.53–1.26 | 0.361 |
| rs2227284 | 5q31.1 | G/T | IL4 | 0.148 | 0.169 | 0.803 | 0.85 | 0.51–1.42 | 0.541 |
| rs2243267 | 5q31.1 | G/C | IL4 | 0.222 | 0.250 | 0.569 | 0.86 | 0.55–1.32 | 0.487 |
| rs2243270 | 5q31.1 | A/G | IL4 | 0.222 | 0.250 | 0.569 | 0.86 | 0.55–1.32 | 0.487 |
| rs2243283 | 5q31.1 | G/C | IL4 | 0.142 | 0.172 | 0.612 | 0.8 | 0.48–1.33 | 0.388 |
| rs2243289 | 5q31.1 | A/G | IL4 | 0.216 | 0.240 | 0.330 | 0.87 | 0.56–1.36 | 0.545 |
| rs1800796 | 7p15.3 | G/C | IL6 | 0.346 | 0.270 | 0.369 | 1.43 | 0.96–2.11 | 0.075 |
| rs2069837 | 7p15.3 | G/A | IL6 | 0.179 | 0.182 | 0.098 | 0.98 | 0.61–1.58 | 0.938 |
| rs1524107 | 7p15.3 | T/C | IL6 | 0.381 | 0.277 | 0.049 | 1.61 | 1.09–2.37 | 1.55E−02 |
| rs2066992 | 7p15.3 | T/G | IL6 | 0.531 | 0.268 | 0.148 | 3.09 | 2.11–4.53 | 3.13E−09 |
| rs2069840 | 7p15.3 | G/C | IL6 | 0.130 | 0.081 | 0.118 | 1.69 | 0.94–3.04 | 0.074 |
MAF, minor allelic frequency; HWE, Hardy–Weinberg Equilibrium; ORs, odds ratios; CI: confidence interval.
HWE p‐value ≤0.05 was excluded; p value ≤0.05 indicates statistical significance.
Minor allele.
Association between the SNPs and risk of EC in genetics models
| SNP | Model | Genotype | Control | Case | OR | P | OR | P |
|---|---|---|---|---|---|---|---|---|
| rs1524107 | Codominant | T/T | 109 (55.3%) | 36 (45%) | 1.00 | 0.06 | 1.00 | 0.06 |
| C/T | 67 (34%) | 27 (33.8%) | 1.22 (0.68–2.19) | 1.24 (0.69–2.24) | ||||
| C/C | 21 (10.7%) | 17 (21.2%) | 2.45 (1.17–5.15) | 2.50 (1.18–5.31) | ||||
| Dominant | T/T | 109 (55.3%) | 36 (45%) | 1.00 | 0.12 | 1.00 | 0.11 | |
| C/T‐C/C | 88 (44.7%) | 44 (55%) | 1.51 (0.90–2.55) | 1.54 (0.90–2.61) | ||||
| Recessive | T/T‐C/T | 176 (89.3%) | 63 (78.8%) | 1.00 | 0.03 | 1.00 | 0.02 | |
| C/C | 21 (10.7%) | 17 (21.2%) | 2.26 (1.12–4.56) | 2.29 (1.13–4.63) | ||||
| Log‐additive | — | — | — | 1.49 (1.04–2.13) | 0.03 | 1.51 (1.05–2.17) | 0.03 | |
| rs2066992 | Codominant | T/T | 109 (55.6%) | 35 (43.2%) | 1.00 | <0.0001 | 1.00 | <0.0001 |
| G/T | 69 (35.2%) | 6 (7.4%) | 0.27 (0.11–0.68) | 0.27 (0.11–0.69) | ||||
| G/G | 18 (9.2%) | 40 (49.4%) | 6.92 (3.53–13.58) | 6.97 (3.53–13.78) | ||||
| Dominant | T/T | 109 (55.6%) | 35 (43.2%) | 1.00 | 0.06 | 1.00 | 0.06 | |
| G/T‐G/G | 87 (44.4%) | 46 (56.8%) | 1.65 (0.98–2.78) | 1.67 (0.98–2.84) | ||||
| Recessive | T/T‐G/T | 178 (90.8%) | 41 (50.6%) | 1.00 | <0.0001 | 1.00 | <0.0001 | |
| G/G | 18 (9.2%) | 40 (49.4%) | 9.65 (5.03–18.51) | 9.85 (5.10–19.00) | ||||
| Log‐additive | — | — | — | 2.27 (1.63–3.17) | <0.0001 | 2.32 (1.65–3.25) | <0.0001 | |
| rs2069840 | Codominant | C/C | 169 (85.3%) | 61 (75.3%) | 1.00 | 0.12 | 1.00 | 0.12 |
| G/C | 26 (13.1%) | 19 (23.5%) | 2.02 (1.05–3.92) | 2.03 (1.05–3.94) | ||||
| G/G | 3 (1.5%) | 1 (1.2%) | 0.92 (0.09–9.05) | 0.94 (0.09–9.33) | ||||
| Dominant | C/C | 169 (85.3%) | 61 (75.3%) | 1.00 | 0.05 | 1.00 | 0.05 | |
| G/C‐G/G | 29 (14.7%) | 20 (24.7%) | 1.91 (1.01–3.63) | 1.92 (1.01–3.66) | ||||
| Recessive | C/C‐G/C | 195 (98.5%) | 80 (98.8%) | 1.00 | 0.86 | 1.00 | 0.85 | |
| G/G | 3 (1.5%) | 1 (1.2%) | 0.81 (0.08–7.93) | 0.81 (0.08–8.00) | ||||
| Log‐additive | — | — | — | 1.65 (0.93–2.91) | 0.09 | 1.66 (0.93–2.95) | 0.09 |
OR: odds ratio; 95% CI: 95% confidence interval.
p < 0.05 indicates statistical significance.
Were calculated from two‐sided chi‐square tests or Fisher's exact tests for either genotype distribution.
Were calculated by unconditional logistic regression adjusted for age.
Figure 1Haplotype block map for the IL6 SNPs genotyped in this study