Literature DB >> 30826453

Emergent functions of proteins in non-stoichiometric supramolecular assemblies.

Rita Pancsa1, Eva Schad1, Agnes Tantos1, Peter Tompa2.   

Abstract

Proteins are the basic functional units of the cell, carrying out myriads of functions essential for life. There are countless reports in molecular cell biology addressing the functioning of proteins under physiological and pathological conditions, aiming to understand life at the atomistic-molecular level and thereby being able to develop remedies against diseases. The central theme in most of these studies is that the functional unit under study is the protein itself. Recent rapid progress has radically challenged and extended this protein-function paradigm, by demonstrating that novel function(s) may emerge when proteins form dynamic and non-stoichiometric supramolecular assemblies. There is an increasing number of cases for such collective functions, such as targeting, localization, protection/shielding and filtering effects, as exemplified by signaling complexes and prions, biominerals and mucus, amphibian adhesions and bacterial biofilms, and a broad range of membraneless organelles (bio-condensates) formed by liquid-liquid phase separation in the cell. In this short review, we show that such non-stoichiometric organization may derive from the heterogeneity of the system, a mismatch in valency and/or geometry of the partners, and/or intrinsic structural disorder and multivalency of the component proteins. Either way, the resulting functional features cannot be simply described by, or predicted from, the properties of the isolated single protein(s), as they belong to the collection of proteins.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Biomolecular condensate; Contextual function; Dynamic assembly; Emergent function; Intrinsically disordered protein; Membraneless organelle; Phase separation

Mesh:

Substances:

Year:  2019        PMID: 30826453     DOI: 10.1016/j.bbapap.2019.02.007

Source DB:  PubMed          Journal:  Biochim Biophys Acta Proteins Proteom        ISSN: 1570-9639            Impact factor:   3.036


  22 in total

Review 1.  Liquid-Liquid Phase Separation and Its Mechanistic Role in Pathological Protein Aggregation.

Authors:  W Michael Babinchak; Witold K Surewicz
Journal:  J Mol Biol       Date:  2020-03-10       Impact factor: 5.469

2.  Physical tuning of galectin-3 signaling.

Authors:  Shaheen A Farhadi; Renjie Liu; Matthew W Becker; Edward A Phelps; Gregory A Hudalla
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-11       Impact factor: 11.205

Review 3.  The dependency of autophagy and ubiquitin proteasome system during skeletal muscle atrophy.

Authors:  Ajay Singh; Jatin Phogat; Aarti Yadav; Rajesh Dabur
Journal:  Biophys Rev       Date:  2021-03-04

4.  Computational resources for identifying and describing proteins driving liquid-liquid phase separation.

Authors:  Rita Pancsa; Wim Vranken; Bálint Mészáros
Journal:  Brief Bioinform       Date:  2021-09-02       Impact factor: 11.622

5.  Development and application of multicolor burst analysis spectroscopy.

Authors:  Daniel Shoup; Andrew Roth; Rajan Thapa; Jason Puchalla; Hays S Rye
Journal:  Biophys J       Date:  2021-04-05       Impact factor: 3.699

6.  PhaSePro: the database of proteins driving liquid-liquid phase separation.

Authors:  Bálint Mészáros; Gábor Erdős; Beáta Szabó; Éva Schád; Ágnes Tantos; Rawan Abukhairan; Tamás Horváth; Nikoletta Murvai; Orsolya P Kovács; Márton Kovács; Silvio C E Tosatto; Péter Tompa; Zsuzsanna Dosztányi; Rita Pancsa
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

Review 7.  "Protein" no longer means what it used to.

Authors:  Gustavo Parisi; Nicolas Palopoli; Silvio C E Tosatto; María Silvina Fornasari; Peter Tompa
Journal:  Curr Res Struct Biol       Date:  2021-07-07

8.  DNA-binding domain as the minimal region driving RNA-dependent liquid-liquid phase separation of androgen receptor.

Authors:  Junaid Ahmed; Attila Meszaros; Tamas Lazar; Peter Tompa
Journal:  Protein Sci       Date:  2021-05-07       Impact factor: 6.993

9.  Small molecules as potent biphasic modulators of protein liquid-liquid phase separation.

Authors:  W Michael Babinchak; Benjamin K Dumm; Sarah Venus; Solomiia Boyko; Andrea A Putnam; Eckhard Jankowsky; Witold K Surewicz
Journal:  Nat Commun       Date:  2020-11-04       Impact factor: 14.919

Review 10.  Flexible Players within the Sheaths: The Intrinsically Disordered Proteins of Myelin in Health and Disease.

Authors:  Arne Raasakka; Petri Kursula
Journal:  Cells       Date:  2020-02-18       Impact factor: 6.600

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