| Literature DB >> 30824562 |
Damian Kołat1, Żaneta Kałuzińska1, Andrzej K Bednarek2, Elżbieta Płuciennik3.
Abstract
The Activator Protein 2 (AP-2) transcription factor (TF) family is vital for the regulation of gene expression during early development as well as carcinogenesis process. The review focusses on the AP-2α and AP-2γ proteins and their dualistic regulation of gene expression in the process of carcinogenesis. Both AP-2α and AP-2γ influence a wide range of physiological or pathological processes by regulating different pathways and interacting with diverse molecules, i.e. other proteins, long non-coding RNAs (lncRNA) or miRNAs. This review summarizes the newest information about the biology of two, AP-2α and AP-2γ, TFs in the carcinogenesis process. We emphasize that these two proteins could have either oncogenic or suppressive characteristics depending on the type of cancer tissue or their interaction with specific molecules. They have also been found to contribute to resistance and sensitivity to chemotherapy in oncological patients. A better understanding of molecular network of AP-2 factors and other molecules may clarify the atypical molecular mechanisms occurring during carcinogenesis, and may assist in the recognition of new diagnostic biomarkers.Entities:
Keywords: TFAP2A; TFAP2C; cancer; transcription factors
Mesh:
Substances:
Year: 2019 PMID: 30824562 PMCID: PMC6418405 DOI: 10.1042/BSR20181928
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
Figure 1Steps of cancerogenesis (based on [3])
Superclasses of TFs (based on [19] and websites: http://gene-regulation.com/pub/databases/transfac/cl.html and http://tfclass.bioinf.med.uni-goettingen.de/)
| Superclass number | Superclass name | Quantity of classes | Quantity of families | Examples of TFs |
|---|---|---|---|---|
| 0 | Yet undefined DNA-binding domains (Superclass ‘0’) | 5 | 10 | PSPC1, RFXANK, NRF1 |
| 1 | Basic Domains | 3 | 18 | c-Jun, c-Fos, Nrf2 |
| 2 | Zinc-coordinating DNA-binding domains | 8 | 25 | ER, GATA-1, RXR-α |
| 3 | Helix–turn–helix | 7 | 22 | HOXA9, Oct-3/4, E2F-1 |
| 4 | Other all-α-helical DNA-binding domains | 2 | 8 | SOX2, TCF-7, UBF |
| 5 | α-Helices exposed by β-structures | 2 | 7 | MEF2, SRF, AIRE |
| 6 | Immunoglobulin fold | 7 | 16 | RelA, STAT1, p53 |
| 7 | β-Hairpin exposed by an α/β-scaffold | 2 | 3 | SMAD4, GCM1, NF-1A |
| 8 | β-Sheet binding to DNA | 2 | 2 | TBP, TBPL1, HMGA1 |
| 9 | β-Barrel DNA-binding domains | 1 | 1 | DbpA, YB-1, YBX2 |
Figure 2Specific domains of AP-2 family with dissimilarities amongst TFAP2α and TFAP2γ (based on [22,23,29])
Chromosomal localization and characteristics of AP-2 family members (based on information from GeneCards and NCBI ‘Gene’ databases)
| AP-2 family member | Cytological location | Number of exons | Size/length | Orientation strand |
|---|---|---|---|---|
| 6p24.3 | 11 | 26474 bases | Minus (−) | |
| 6p12.3 | 11 | 29910 bases | Plus (+) | |
| 20q13.31 | 7 | 9982 bases | Plus (+) | |
| 6p12.3 | 8 | 59490 bases | Plus (+) | |
| 1p34.3 | 7 | 21959 bases | Plus (+) |
Comparison of AP-2α isoforms (based on UniProt KnowledgeBase)
| AP-2α isoform | Length (amino acids) | Mass (Da) | Notes |
|---|---|---|---|
| Isoform ‘1’ (UniParc identifier: P05549-1) | 437 | 48062 | Canonical sequence; others refer to it |
| Isoform ‘2’ (UniParc identifier: P05549-5) | 431 | 47183 | Differs from canonical model in way that first 15 amino acids are substituted: MLWKLTDNIKYEDCE → MLVHSFSAM |
| Isoform ‘4′ (UniParc identifier: P05549-2) | 365 | 40557 | Altered amino acids from 296 to 437 as follows: EAVHLARDFG…SSDKEEKHRK → KRIHLLTRRN…SILLPSFPLP |
| Isoform ‘5’ (UniParc identifier: P05549-6) | 433 | 47440 | Differs from canonical model in way that first 15 amino acids are substituted: MLWKLTDNIKYEDCE → MSILAKMGDWQ |
Localization and effect of PTMs in AP-2α (based on GeneCards database, neXtProt platform PhosphoSitePlus resource)
| Type of PTM | Position in protein | Notes (if available) |
|---|---|---|
| Sumoylation | 10 (lysine) | Leads to inhibition of transcriptional activity |
| Phosphorylation | 73 (tyrosine) | |
| Phosphorylation | 119 (serine) | |
| Sumoylation | 177 (lysine) | |
| Phosphorylation | 181 (serine) | |
| Sumoylation | 184 (lysine) | |
| Phosphorylation | 185 (serine) | |
| Phosphorylation | 187 (serine) | |
| Phosphorylation | 219 (serine) | Regulate molecular association and activity; induced transcription process |
| Phosphorylation | 239 (serine) | |
| Phosphorylation | 258 (serine) | Regulate molecular association; altered transcription process |
| Mono-methylation | 263 (arginine) | |
| Phosphorylation | 326 (serine) | |
| Phosphorylation | 333 (threonine) | |
| Phosphorylation | 428 (serine) | |
| Phosphorylation | 429 (serine) | Induced transcription process |
Comparison of AP-2γ isoforms (based on UniProt KnowledgeBase)
| AP-2γ isoform | Length (amino acids) | Mass (Da) | Notes |
|---|---|---|---|
| Isoform ‘1’ (UniParc identifier: Q92754-1) | 450 | 49,177 | Canonical sequence; others refer to it |
| Isoform ‘2’ (UniParc identifier: Q92754-2) | 281 | 31,010 | Differs from canonical model in way that first 169 amino acids are missing |
Localization and effect of PTMs in AP-2γ (based on GeneCards database, neXtProt platform PhosphoSitePlus resource)
| Type of modification | Position in protein | Notes (if available) |
|---|---|---|
| Sumoylation | 10 (lysine) | Leads to inhibition of transcriptional activity |
| Phosphorylation | 252 (serine) | |
| Mono-methylation | 276 (arginine) | |
| Phosphorylation | 434 (serine) | |
| Phosphorylation | 438 (serine) | |
| Ubiquitylation | 444 (lysine) | |
| Ubiquitylation | 447 (lysine) |
Influence of AP-2α and AP-2γ factors on selected developmental processes, diseases, and interactive molecules (based on GeneCards, Reactome databases, and Atlas of Genetics and Cytogenetics in Oncology and Haematology)
| AP-2α | AP-2γ | |
|---|---|---|
| Participation in development processess – major | Face, eye, limb, body wall, neural tube development | |
| Participation in development processess – other | Early morphogenesis of lens vesicle; kidney development | Male gonad development |
| Associated diseases | BOFS; ectopic thymus; anophthalmia-microphthalmia syndrome | Exencephaly; melanoma; pre-eclampsia |
| Mutual interactions | Interacts with WWOX, CITED2, CITED4, UBE2I, KCTD1, KCTD15, EP300; Suppresses MCAM/MUC18, C/EBPα; Stimulates transcriptional activation of PITX2 | |
| Exclusive interactions | Along with binding NPM1 – represses HSPD1 gene expression, inhibiting formation of mitochondrial chaperonin; | Along with MTA1 – mediates epigenetic regulation of |
| Stimulates APOE gene transcription in co-operation with DEK; | ||
| Interacts with RALBP1 (in complex containing NUMB and EPN1) during interphase and mitosis | ||
Figure 3Interaction network of AP-2 factors with selected proteins (STRING database)
Figure 4Interaction network of AP-2α/γ factors with selected lncRNA and miRNA molecules (based on [62–81])
Regulatory role of AP-2α in various types of cancer along with involved molecular pathways (based on [15,16,89–104])
| Protein | Type of cancer | Regulation | Function | Pathways (if available) | References |
|---|---|---|---|---|---|
| Hepatocellular carcinoma | HIF-1α-mediated VEGF/PEDF signaling pathway; | [ | |||
| β-catenin/TCF/LEF signaling; | |||||
| Bax/cytochrome | |||||
| CdK-inhibitor p21WAF in p53-dependent and p53-independent pathways | |||||
| Breast cancer | Reduced | [ | |||
| Glioblastoma | [ | ||||
| Melanoma | Comparison of stage 4 melanomas compared with non-stage 4 display, that silenced | [ | |||
| Gastric cancer | Notch signaling pathway | [ | |||
| Lower level of | |||||
| Prostate cancer | Loss of | [ | |||
| Colorectal cancer | Wnt signaling pathway | [ | |||
| Neuroblastoma | [ | ||||
| Pancreatic cancer | Cell lines express high nuclear levels of | [ | |||
| AP-2α variant 6 seems to be specific for pancreatic cancer | |||||
| Acute myeloid leukemia | [ | ||||
| Squamous cell carcinomas | AP-2α is involved in complex keratinocyte biology including proliferation, differentiation, and carcinogenesis | [ | |||
| Nasopharyngeal carcinoma | HIF-1α-mediated VEGF/PEDF signaling pathway | [ |
Regulatory role of AP-2γ in various types of cancer along with involved molecular pathways (based on [38,75–77,105–108])
| Protein | Type of cancer | Regulation | Function | Pathways (if available) | References |
|---|---|---|---|---|---|
| Breast cancer | [ | ||||
| High | |||||
| Melanoma | High level of | [ | |||
| Testicular cancer | [ | ||||
| Neuroblastoma | [ | ||||
| Primary ovarian tumors | Overexpressed in advanced-stage cancers compared with early-stage carcinomas | [ | |||
| Lung cancer | AK1 signaling MAPK and Snail pathways activated by TGFBR1-PAK1 signaling | [ | |||
| Lung cancer | [ | ||||
| Patients with low-level expression of Slug and miR-137 but high-level expression of |