Literature DB >> 30814461

Characterization of an Unusual DS-1-Like G8P[8] Rotavirus Strain from Japan in 2017: Evolution of Emerging DS-1-Like G8P[8] Strains through Reassortment.

Hajime Kamiya1, Ratana Tacharoenmuang2,3, Tomihiko Ide2, Manami Negoro4, Takaaki Tanaka5, Kazutoyo Asada6, Haruna Nakamura6, Katsumi Sugiura6, Masakazu Umemoto7, Haruo Kuroki8, Hiroaki Ito9, Shigeki Tanaka10, Mitsue Ito11, Saori Fukuda2, Riona Hatazawa2, Yuya Hara2, Ratigorn Guntapong3, Takayuki Murata2, Kiyosu Taniguchi6, Shigeru Suga6, Takashi Nakano5, Koki Taniguchi2, Satoshi Komoto2.   

Abstract

The emergence of unusual DS-1-like intergenogroup reassortant rotaviruses with a bovine-like G8 genotype (DS-1-like G8P[8] strains) has been reported in several Asian countries. During the rotavirus surveillance program in Japan in 2017, a DS-1-like G8P[8] strain (RVA/Human-wt/JPN/SO1162/2017/G8P[8]) was identified in 43 rotavirus-positive stool samples. Strain SO1162 was shown to have a unique genotype constellation, including genes from both genogroup 1 and 2: G8-P[8]-I2-R2-C2-M2-A2-N2-T2-E2-H2. Phylogenetic analysis revealed that the VP1 gene of strain SO1162 appeared to have originated from DS-1-like G1P[8] strains from Thailand and Vietnam, while the remaining 10 genes were closely related to those of previously reported DS-1-like G8P[8] strains. Thus, SO1162 was suggested to be a reassortant strain that acquired the VP1 gene from Southeast Asian DS-1-like G1P[8] strains on the genetic background of co-circulating DS-1-like G8P[8] strains. Our findings provide important insights into the evolutionary dynamics of emerging DS-1-like G8P[8] strains.

Entities:  

Keywords:  DS-1-like G8P[8] strains; DS-1-like intergenogroup reassortant strains; group A rotavirus; whole genomic analysis

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Year:  2019        PMID: 30814461     DOI: 10.7883/yoken.JJID.2018.484

Source DB:  PubMed          Journal:  Jpn J Infect Dis        ISSN: 1344-6304            Impact factor:   1.362


  2 in total

1.  Whole genome sequencing and evolutionary analysis of G8P [8] rotaviruses emerging in Japan.

Authors:  Tung Phan; Masaaki Kobayashi; Koo Nagasawa; Riona Hatazawa; Ngan Thi Kim Pham; Hideaki Miyashita; Satoshi Komoto; Takeshi Tajima; Tuneyoshi Baba; Shoko Okitsu; Pattara Khamrin; Niwat Maneekarn; Hirokazu Kimura; Takeshi Kobayashi; Satoshi Hayakawa; Hiroshi Ushijima
Journal:  Virusdisease       Date:  2022-04-25

2.  Full genome characterization of novel DS-1-like G9P[8] rotavirus strains that have emerged in Thailand.

Authors:  Saori Fukuda; Ratana Tacharoenmuang; Ratigorn Guntapong; Sompong Upachai; Phakapun Singchai; Tomihiko Ide; Riona Hatazawa; Karun Sutthiwarakom; Santip Kongjorn; Napa Onvimala; Kriangsak Ruchusatsawast; Pimpa Rungnopakun; Jutarat Mekmallika; Yoshiki Kawamura; Kazushi Motomura; Masashi Tatsumi; Naokazu Takeda; Takayuki Murata; Tetsushi Yoshikawa; Ballang Uppapong; Koki Taniguchi; Satoshi Komoto
Journal:  PLoS One       Date:  2020-04-22       Impact factor: 3.240

  2 in total

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