| Literature DB >> 30804983 |
Rami A Ballout1, Chadi Al Alam2, Penelope E Bonnen3, Martina Huemer4,5, Ayman W El-Hattab6, Rolla Shbarou2.
Abstract
Mitochondrial DNA depletion syndromes (MTDPS) are a group of rare genetic disorders caused by defects in multiple genes involved in mitochondrial DNA (mtDNA) maintenance. Among those, FBXL4 mutations result in the encephalomyopathic mtDNA depletion syndrome 13 (MTDPS13; OMIM #615471), which commonly presents as a combination of failure to thrive, neurodevelopmental delays, encephalopathy, hypotonia, and persistent lactic acidosis. We report here the case of a Lebanese infant presenting to us with profound neurodevelopmental delays, generalized hypotonia, facial dysmorphic features, and extreme emaciation. Whole-exome sequencing (WES) showed the girl as having MTDPS13 with an underlying FBXL4 missense mutation that has been previously reported only twice in unrelated individuals (c.1303C > T). Comprehensive literature search marked our patient as being the 94th case of MTDPS13 reported to date worldwide, and the first from Lebanon. We include at the end of this report a comprehensive mutation review table of all the pathological FBXL4 mutations reported in the literature, using it to highlight, for the first time, a possible founder effect of Arab origins to the disorder, being most prevalent in patients of Arab descent as shown in our mutation table. Finally, we provide a direct comparison of the disorder's clinical manifestations across two unrelated patients harboring the same disease-causing mutation as our patient, emphasizing the remarkable variability in genotype-to-phenotype correlation characteristic of the disease.Entities:
Keywords: FBXL4; genetic mutations; mitochondria; mitochondrial DNA (mtDNA); mitochondrial diseases; mitochondrial fusion; pediatric genetics; rare diseases
Year: 2019 PMID: 30804983 PMCID: PMC6370620 DOI: 10.3389/fgene.2019.00039
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
List of all pathological FBXL4 genotypes reported to date in the literature.
| c.1304G>T (p.Arg435Leu) | c.1304G>T (p.Arg435Leu) | Missense/Missense | Homozygous | Huemer et al., | 1 |
| c.513-1G>A | c.513-1G>A | Splice-site/Splice-site | Homozygous | 1 | |
| c.1361A>C (p.Gln454Pro) | c.1361A>C (p.Gln454Pro) | Missense/Missense | Homozygous | 1 | |
| c.662A>T (p.Asp221Val) | c.662A>T (p.Asp221Val) | Missense/Missense | Homozygous | 1 | |
| c.1304G>A (p.Arg435Gln) | c.1232G>A (p.Cys411Tyr) | Missense/Missense | Compound heterozygous | 2 | |
| c.661G>C; (p.Asp221His) | c.1641_1642delTG (p.Cys547fs) | Missense/frameshift | Compound heterozygous | 1 | |
| c.1772A>G (p.Asp591Gly) | c.1772A>G (p.Asp591Gly) | Missense/Missense | Homozygous | 1 | |
| c.1067delG (p.Gly356Alafs*15) | c.1067delG (p.Gly356Alafs*15) | Frameshift/frameshift | Homozygous | 1 | |
| c.1232G>A (p.Cys411Tyr) | c.1232G>A (p.Cys411Tyr) | Missense/Missense | Homozygous | 1 | |
| c.1444C>T (p.Arg482Trp) | c.1546_1563del (p.Pro516_Ser521del) | Missense/frameshift | Compound heterozygous | 1 | |
| c.445G>A (p.Gly149Arg) | c.445G>A (p.Gly149Arg) | Missense/Missense | Homozygous | 1 | |
| c.1703G>C (p.Gly568Ala) | c.316C>T (p.Gln106*) | Missense/Non-sense | Compound heterozygous | Huemer et al., | 1 |
| c.1555C>T (p.Gln519*) | c.1555C>T (p.Gln519*) | Non-sense/Non-sense | Homozygous | Bonnen et al., | 5 |
| c.1303C>T (p.Arg435*) | c.1303C>T (p.Arg435*) | Non-sense/Non-sense | Homozygous | Bonnen et al., | 5 |
| c.1703G>C (p.Gly568Ala) | c.1703G>C (p.Gly568Ala) | Missense/Missense | Homozygous | Bonnen et al., | 1 |
| c.219T>A (p.Tyr73*) | c.219T>A (p.Tyr73*) | Non-sense/Non-sense | Homozygous | Dai et al., | 1 |
| c.1687C>T (p.Gln563*) | c.1622C>T (p.Thr541Ile) | Non-sense/missense | Compound heterozygous | Dai et al., | 1 |
| c.1838T>A (p.Val613Glu) | c.1389+3_+6delAAGT | Missense/splice-site | Compound heterozygous | 1 | |
| c.64C>T (p.Arg22*) | c.1444C>T (p.Arg482Trp) | Non-sense/missense | Compound heterozygous | 1 | |
| c.273_277del (p.Phe91fs) | c.273_277del (p.Phe91fs) | Frameshift/frameshift | Homozygous | 1 | |
| c.1641_1642delTG (p.Cys547fs) | c.1232G>A (p.Cys411Tyr) | Frameshift/missense | Compound heterozygous | 1 | |
| c.64C>T (p.Arg22*) | c.1641_1642delTG (p.Cys547fs) | Non-sense/frameshift | Compound heterozygous | 1 | |
| c.1641_1642delTG (p.Cys547fs) | c.1641_1642delTG (p.Cys547fs) | Frameshift/frameshift | Homozygous | Antoun et al., | 1 |
| c.1442T>C (p.Leu481Pro) | c.1442T>C (p.Leu481Pro) | Missense/Missense | Homozygous | Barøy et al., | 1 |
| c.1586C>A (p.Ala529Glu) | c.1790A>C (p.Gln597Pro) | Missense/Missense | Compound heterozygous | Morton et al., | 2 |
| c.292C>T (p.Arg98*) | c.1303C>T (p.Arg435*) | Non-sense/Non-sense | Compound heterozygous | van Rij et al., | 1 |
| c.858+1G>T | c.585+5G>C | Splice-site/Splice-site | Compound heterozygous | Pronicka et al., | 1 |
| c.1303C>T (p.Arg435*) | c.64C>T (p.Arg22*) | Non-sense/Non-sense | Compound heterozygous | 1 | |
| c.64C>T (p.Arg22*) | c.64C>T (p.Arg22*) | Non-sense/Non-sense | Homozygous | 1 | |
| c.1411G>A (p.Ala471Thr) | c.1790A>C (p.Gln597Pro) | Missense/Missense | Compound heterozygous | Wortmann et al., | 2 |
| c.1694A>G (p.Asp565Gly) | c.1694A>G (p.Asp565Gly) | Missense/Missense | Homozygous | Gai et al., | 1 |
| c.1444C>T (p.Arg482Trp) | c.1444C>T (p.Arg482Trp) | Missense/Missense | Homozygous | Gai et al., | 3 |
| c.1652T>A (p.Ile551Asn) | c.1652T>A (p.Ile551Asn) | Missense/Missense | Homozygous | 1 | |
| c.1790A>C (p.Gln597Pro) | c.1067delG (p.Gly356fs) | Missense/frameshift | Compound heterozygous | 1 | |
| c.614T>C (p.Ile205Thr) | c.106A>T (p.Arg36*) | Missense/non-sense | Compound heterozygous | 1 | |
| c.1229C>T (p.Ser410Phe) | c.1229C>T (p.Ser410Phe) | Missense/Missense | Homozygous | 1 | |
| c.616C>T (p.Arg206*) | c.616C>T (p.Arg206*) | Non-sense/Non-sense | Homozygous | El-Hattab et al., | 2 |
| c.1750T>C (p.Cys584Arg) | c.1750T>C (p.Cys584Arg) | Missense/Missense | Homozygous | 1 | |
| c.292C>T (p.Arg98*) | c.292C>T (p.Arg98*) | Non-sense/Non-sense | Homozygous | 2 | |
| c.1698A>G (p.Ile566Met) | c.1698A>G (p.Ile566Met) | Missense/Missense | Homozygous | 14 | |
| c.1317G>A | c.1317G>A | Splice-site/Splice-site | Homozygous | 1 | |
| c.1648_1649delGA (p.Asp550Hisfs*2) | c.1648_1649delGA (p.Asp550Hisfs*2) | Frameshift/Frameshift | Homozygous | 2 | |
| c.1641_1642delTG (p.Cys547fs) | c.419T>C (p.Val140Ala) | Frameshift/missense | Compound heterozygous | 1 | |
| c.419T>C (p.Val140Ala) | c.419T>C (p.Val140Ala) | Missense/Missense | Homozygous | 1 | |
| c.1210C>T (p.Gln404*) | c.1210C>T (p.Gln404*) | Non-sense/Non-sense | Homozygous | 1 | |
| c.1641_1642delTG (p.Cys547fs) | c.618_621dupACTG (p.Glu208Thrfs*5) | Frameshift/frameshift | Homozygous | 1 | |
| c.1540T>G (p.Trp514Gly) | c.1540T>G (p.Trp514Gly) | Missense/Missense | Homozygous | 1 | |
| c.326delG; (p.Ser109Metfs*35) | c.1622C>T (p.Tyr541Ile) | Frameshift/missense | Compound heterozygous | 1 | |
| exons 2, 3, 4del | exons 2, 3, 4del | Exonic deletion/Exonic deletion | Homozygous | 1 | |
| Total | 94 |
A direct comparison of our patient's manifestations to those of the two other patients reported elsewhere with an identical FBXL4 genotype.
| Sex | Female | Male | Male |
| Age of symptom onset | 3 months | Before 1 month | At birth (day 0) |
| Age at presentation | 9 months | 1 month | 1 day |
| Birthweight (kg) | 2.4 | 2.3 | Unknown |
| Hypotonia | Severe | Severe | Severe |
| Cataracts | Absent | Present, with optic atrophy | Absent |
| Cardiac anomalies | None | Cardiomyopathy | Cardiomyopathy |
| Brain MRI findings | Bilateral temporal and frontal atrophy with non-hydrocephalus ventriculomegaly. | Prominence of the Cisterna Magna, with an abnormal appearance of the dorsal brainstem and posterior limb of the internal capsule. | Cerebellar hypoplasia |
| Lactic acid levels (mmol/L) | 3.5 | 18 | 18 |
| Ammonia levels | Non-elevated | Non-elevated | Unknown |
| Age at death | Lost to follow-up | 4 months | Lost to follow-up |
This boy did not have any facial dysmorphic features.
Patient was still alive at the age of 2 years and 8 months, after which she was lost to follow-up.