| Literature DB >> 30801015 |
Lars Wörmer1, Tatsuhiko Hoshino2, Marshall W Bowles3, Bernhard Viehweger1, Rishi R Adhikari1, Nan Xiao2, Go-Ichiro Uramoto2,4, Martin Könneke1, Cassandre S Lazar1,5, Yuki Morono2, Fumio Inagaki2,6, Kai-Uwe Hinrichs1.
Abstract
Marine sediments host an unexpectedly large microbial biosphere, suggesting unique microbial mechanisms for surviving burial and slow metabolic turnover. Although dormancy is generally considered an important survival strategy, its specific role in subsurface sediments remains unclear. We quantified dormant bacterial endospores in 331 marine sediment samples from diverse depositional types and geographical origins. The abundance of endospores relative to vegetative cells increased with burial depth and endospores became dominant below 25 m, with an estimated population of 2.5 × 1028 to 1.9 × 1029 endospores in the uppermost kilometer of sediment and a corresponding biomass carbon of 4.6 to 35 Pg surpassing that of vegetative cells. Our data further identify distinct endospore subgroups with divergent resistance to burial and aging. Endospores may shape the deep biosphere by providing a core population for colonization of new habitats and/or through low-frequency germination to sustain slow growth in this environment.Entities:
Year: 2019 PMID: 30801015 PMCID: PMC6382399 DOI: 10.1126/sciadv.aav1024
Source DB: PubMed Journal: Sci Adv ISSN: 2375-2548 Impact factor: 14.136
Fig. 1Distribution of vegetative cells and endospores versus depth.
Concentrations of (A) vegetative cells and (B) endospores and (C) ratio of endospores to vegetative cells versus sediment depth in samples from various Ocean Drilling Program (ODP) and Integrated Ocean Drilling Program (IODP) expeditions and national research cruises (cf. table S1). Cell concentrations are based on 16S rRNA gene targets quantified using dPCR data or on cell enumeration via flow cytometry (M84/1 and POS-450) and endospore concentrations on the diagnostic biomarker DPA. The solid regression line in (A) is log cells = 7.319 − 1.301 log depth (R2 = 0.519, P < 0.001, n = 267) from this study, and the dashed line is the regression line from the global estimate of the marine subseafloor biosphere (): log cells = 8.05 − 0.68 log depth (R2 = 0.70, n = 2037). The regression line in (B) is log endospores = 6.039 − 0.228 log depth (R2 = 0.136, P < 0.001, n = 220). Samples with DPA concentration below our current detection limit (D.L.) are shown as empty circles. These data are not included in the regression. The regression line in (C) is log (endospores/cells) = −1.636 + 1.164 log depth {R2 = 0.577, P < 0.001, n = 199; n < 220 [number plotted in (B)] because cell concentration data are not available for all samples in which endospores were detected}.
Fig. 2Endospore response to burial and aging.
(A) Endospore concentration versus sediment age in samples from various ODP and IODP expeditions and national research cruises (cf. table S1). The segmented regression line (R2 = 0.656, P < 0.0001, n = 166, solid line) in (A) is composed of a first section (age < 14,266 years) with log endospores = 7.515 − 0.450 log age and a second section (age > 14,226 years) with log endospores = 5.993 − 0.084 log age. The lower number of samples in comparison to Fig. 1B is because sediment age data were not available for all sites. (B) Lines represent temperature-dependent decimal reduction values for three groups of increasingly resistant endospores investigated in thermal inactivation experiments (). They denote the time needed to reduce the endospore population by one order of magnitude at a given temperature. Blue dots indicate depth and age of samples analyzed in this study. Equivalence of depth and temperature axis is obtained by applying a geothermal gradient of 30°C/km.
Estimates of endospore abundance and biomass.
Summary of vegetative cell and endospore abundance for the top kilometer of subseafloor sediment based on the three modeling approaches performed. Biomass data are calculated from DPA abundance in the case of endospores and from cell abundance in the case of vegetative cells.
| Average sediment depth | Global correlation of | 8.2 × 1028 | 15 | 1.3 × 1029 | 1.8 |
| Single-site | Endospore | 2.5 × 1028 | 4.6 | – | – |
| Vegetative cell to | Global correlation of | 1.9 × 1029 | 35 | 8.5 × 1028 | 1.2 |