Literature DB >> 22927371

Global distribution of microbial abundance and biomass in subseafloor sediment.

Jens Kallmeyer1, Robert Pockalny, Rishi Ram Adhikari, David C Smith, Steven D'Hondt.   

Abstract

The global geographic distribution of subseafloor sedimentary microbes and the cause(s) of that distribution are largely unexplored. Here, we show that total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. This variation is strongly correlated with mean sedimentation rate and distance from land. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9⋅10(29) cells [corresponding to 4.1 petagram (Pg) C and ∼0.6% of Earth's total living biomass]. This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate Earth's total number of microbes and total living biomass to be, respectively, 50-78% and 10-45% lower than previous estimates.

Mesh:

Year:  2012        PMID: 22927371      PMCID: PMC3479597          DOI: 10.1073/pnas.1203849109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Distributions of microbial activities in deep subseafloor sediments.

Authors:  Steven D'Hondt; Bo Barker Jørgensen; D Jay Miller; Anja Batzke; Ruth Blake; Barry A Cragg; Heribert Cypionka; Gerald R Dickens; Timothy Ferdelman; Kai-Uwe Hinrichs; Nils G Holm; Richard Mitterer; Arthur Spivack; Guizhi Wang; Barbara Bekins; Bert Engelen; Kathryn Ford; Glen Gettemy; Scott D Rutherford; Henrik Sass; C Gregory Skilbeck; Ivano W Aiello; Gilles Guèrin; Christopher H House; Fumio Inagaki; Patrick Meister; Thomas Naehr; Sachiko Niitsuma; R John Parkes; Axel Schippers; David C Smith; Andreas Teske; Juergen Wiegel; Christian Naranjo Padilla; Juana Luz Solis Acosta
Journal:  Science       Date:  2004-12-24       Impact factor: 47.728

2.  Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria.

Authors:  Axel Schippers; Lev N Neretin; Jens Kallmeyer; Timothy G Ferdelman; Barry A Cragg; R John Parkes; Bo B Jørgensen
Journal:  Nature       Date:  2005-02-24       Impact factor: 49.962

3.  Deep sub-seafloor prokaryotes stimulated at interfaces over geological time.

Authors:  R John Parkes; Gordon Webster; Barry A Cragg; Andrew J Weightman; Carole J Newberry; Timothy G Ferdelman; Jens Kallmeyer; Bo B Jørgensen; Ivano W Aiello; John C Fry
Journal:  Nature       Date:  2005-07-21       Impact factor: 49.962

4.  Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin.

Authors:  Fumio Inagaki; Takuro Nunoura; Satoshi Nakagawa; Andreas Teske; Mark Lever; Antje Lauer; Masae Suzuki; Ken Takai; Mark Delwiche; Frederick S Colwell; Kenneth H Nealson; Koki Horikoshi; Steven D'Hondt; Bo B Jørgensen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

5.  Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae.

Authors:  R Himmelreich; H Hilbert; H Plagens; E Pirkl; B C Li; R Herrmann
Journal:  Nucleic Acids Res       Date:  1996-11-15       Impact factor: 16.971

6.  Aerobic microbial respiration in 86-million-year-old deep-sea red clay.

Authors:  Hans Røy; Jens Kallmeyer; Rishi Ram Adhikari; Robert Pockalny; Bo Barker Jørgensen; Steven D'Hondt
Journal:  Science       Date:  2012-05-18       Impact factor: 47.728

7.  Biological formation of ethane and propane in the deep marine subsurface.

Authors:  Kai-Uwe Hinrichs; John M Hayes; Wolfgang Bach; Arthur J Spivack; Laura R Hmelo; Nils G Holm; Carl G Johnson; Sean P Sylva
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-21       Impact factor: 11.205

Review 8.  Big bacteria.

Authors:  H N Schulz; B B Jorgensen
Journal:  Annu Rev Microbiol       Date:  2001       Impact factor: 15.500

9.  Metabolic activity of subsurface life in deep-sea sediments.

Authors:  Steven D'Hondt; Scott Rutherford; Arthur J Spivack
Journal:  Science       Date:  2002-03-15       Impact factor: 47.728

Review 10.  Prokaryotes: the unseen majority.

Authors:  W B Whitman; D C Coleman; W J Wiebe
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

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  229 in total

1.  Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage.

Authors:  Mireia Fillol; Jean-Christophe Auguet; Emilio O Casamayor; Carles M Borrego
Journal:  ISME J       Date:  2015-08-18       Impact factor: 10.302

2.  Microbiome, a new dimension in cancer research.

Authors:  Antonio Galvao Neto; Azore-Dee Bradshaw; Zhiheng Pei
Journal:  Ann Transl Med       Date:  2015-09

Review 3.  Cancer and the microbiota.

Authors:  Wendy S Garrett
Journal:  Science       Date:  2015-04-03       Impact factor: 47.728

4.  Gene expression in the deep biosphere.

Authors:  William D Orsi; Virginia P Edgcomb; Glenn D Christman; Jennifer F Biddle
Journal:  Nature       Date:  2013-06-12       Impact factor: 49.962

Review 5.  Revenge of the phages: defeating bacterial defences.

Authors:  Julie E Samson; Alfonso H Magadán; Mourad Sabri; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2013-08-27       Impact factor: 60.633

6.  Meta-analysis of quantification methods shows that archaea and bacteria have similar abundances in the subseafloor.

Authors:  Karen G Lloyd; Megan K May; Richard T Kevorkian; Andrew D Steen
Journal:  Appl Environ Microbiol       Date:  2013-10-04       Impact factor: 4.792

7.  Shrinking majority of the deep biosphere.

Authors:  Bo Barker Jørgensen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-10       Impact factor: 11.205

Review 8.  Physiological limits to life in anoxic subseafloor sediment.

Authors:  William D Orsi; Bernhard Schink; Wolfgang Buckel; William F Martin
Journal:  FEMS Microbiol Rev       Date:  2020-03-01       Impact factor: 16.408

9.  Predominant archaea in marine sediments degrade detrital proteins.

Authors:  Karen G Lloyd; Lars Schreiber; Dorthe G Petersen; Kasper U Kjeldsen; Mark A Lever; Andrew D Steen; Ramunas Stepanauskas; Michael Richter; Sara Kleindienst; Sabine Lenk; Andreas Schramm; Bo Barker Jørgensen
Journal:  Nature       Date:  2013-03-27       Impact factor: 49.962

10.  Turnover of microbial lipids in the deep biosphere and growth of benthic archaeal populations.

Authors:  Sitan Xie; Julius S Lipp; Gunter Wegener; Timothy G Ferdelman; Kai-Uwe Hinrichs
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

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