Literature DB >> 30800585

First high-quality draft genome of Ochrobactrum haematophilum P6BS-III, a highly glyphosate-tolerant strain isolated from agricultural soil in Argentina.

Francisco Massot1,2,3, Panagiotis Gkorezis1, Breanne McAmmond4, Jan d'Haen5, Jonathan Van Hamme4, Luciano J Merini6, Jaco Vangronsveld1, Sofie Thijs1.   

Abstract

We report here on a high-quality draft genome sequence of Ochrobactrum haematophilum strain P6BS-III (DSM 106071), a Gram negative, non-sporulating bacterium isolated from a pastureland (Buenos Aires province, Argentina) which had been chronically exposed to the herbicide glyphosate. The genome of 5.25 Mb with a DNA G+C content of 56.63% size was estimated to contain 5,291 protein coding genes and 57 RNA genes. Genome analysis revealed the presence of the phn operon, which is involved in the phosphonate degradation pathway, and a class II 5-enolpyruvylshikimate-3-phosphate synthase (EPSP) that confers tolerance to glyphosate. Genes related to plant growth promotion traits are also present, and include genes for phosphorus metabolism, calcium phosphate and phytate solubilization, siderophore production, organic acid biosynthesis and indole acetic acid (IAA) production.

Entities:  

Keywords:  5-Enolpyruvylshikimate-3-phosphate synthase; Glyphosate; Ochrobactrum haematophilum; Plant growth promotion; Soil contamination

Year:  2019        PMID: 30800585      PMCID: PMC6370575          DOI: 10.1007/s13205-019-1606-y

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  32 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors:  Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

Review 3.  Phytoremediation of contaminated soils and groundwater: lessons from the field.

Authors:  Jaco Vangronsveld; Rolf Herzig; Nele Weyens; Jana Boulet; Kristin Adriaensen; Ann Ruttens; Theo Thewys; Andon Vassilev; Erik Meers; Erika Nehnevajova; Daniel van der Lelie; Michel Mench
Journal:  Environ Sci Pollut Res Int       Date:  2009-06-26       Impact factor: 4.223

4.  Role of Pseudomonas putida indoleacetic acid in development of the host plant root system.

Authors:  Cheryl L Patten; Bernard R Glick
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

5.  Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignonense sp. nov., isolated from human clinical specimens.

Authors:  Peter Kämpfer; Holger C Scholz; Birgit Huber; Enevold Falsen; Hans-Jürgen Busse
Journal:  Int J Syst Evol Microbiol       Date:  2007-11       Impact factor: 2.747

6.  Structural basis of glyphosate tolerance resulting from mutations of Pro101 in Escherichia coli 5-enolpyruvylshikimate-3-phosphate synthase.

Authors:  Martha L Healy-Fried; Todd Funke; Melanie A Priestman; Huijong Han; Ernst Schönbrunn
Journal:  J Biol Chem       Date:  2007-09-12       Impact factor: 5.157

7.  Versatile and open software for comparing large genomes.

Authors:  Stefan Kurtz; Adam Phillippy; Arthur L Delcher; Michael Smoot; Martin Shumway; Corina Antonescu; Steven L Salzberg
Journal:  Genome Biol       Date:  2004-01-30       Impact factor: 13.583

8.  [Microbial degradation of organophosphonates by soil bacteria].

Authors:  I T Ermakova; T V Shushkova; A A Leont'evskiĭ
Journal:  Mikrobiologiia       Date:  2008 Sep-Oct

9.  MaGe: a microbial genome annotation system supported by synteny results.

Authors:  David Vallenet; Laurent Labarre; Zoé Rouy; Valérie Barbe; Stéphanie Bocs; Stéphane Cruveiller; Aurélie Lajus; Géraldine Pascal; Claude Scarpelli; Claudine Médigue
Journal:  Nucleic Acids Res       Date:  2006-01-10       Impact factor: 16.971

10.  CD-HIT Suite: a web server for clustering and comparing biological sequences.

Authors:  Ying Huang; Beifang Niu; Ying Gao; Limin Fu; Weizhong Li
Journal:  Bioinformatics       Date:  2010-01-06       Impact factor: 6.937

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